Matrix_130 | TCP16 | Not available | Upstream | -180 |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -115 |
| | | Upstream | -141 |
Matrix_186 | FHY3 | Not available | Upstream | -115 |
| | | Upstream | -141 |
Matrix_216 | TCP16 | Not available | Upstream | -180 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -180 |
Matrix_294 | MEE35 | Not available | Upstream | -180 |
Matrix_49 | FHY3/FAR1 | Not available | Upstream | -112 |
| | | Upstream | -138 |
Matrix_507 | TCP3 | Not available | Upstream | -322 |
Matrix_77 | PRR5 | Not available | Upstream | -114 |
| | | Upstream | -140 |
| | | Upstream | -278 |
Motif_153 | MARABOX1 | A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR) | Downstream | 2004 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -116 |
| | | Upstream | -142 |
| | | Upstream | -247 |
| | | Upstream | -280 |
| | | Upstream | -281 |
| | | Upstream | -390 |
| | | Upstream | -768 |
| | | Upstream | -791 |
| | | Upstream | -792 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -117 |
| | | Upstream | -143 |
| | | Upstream | -1140 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Downstream | 2003 |
| | | Downstream | 1999 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Downstream | 2004 |
| | | Downstream | 2000 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -989 |
Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Upstream | -67 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -171 |