View conserved binding sites


Gene
BR03G25290
Description
Alkaline/neutral invertase
Alias
Bra000681;Bra000681
Binding siteNameDescriptionLocationPosition
Matrix_109GBF3Not availableUpstream-1459
Matrix_143GATA14;GATA6;GATA5Not availableUpstream-1640
Matrix_147ERF3;AT1G80580Not availableUpstream-703
Upstream-704
Matrix_151ASIL1Not availableUpstream-702
Upstream-703
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-702
Upstream-703
Upstream-704
Upstream-705
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-1088
Matrix_208AP1Not availableUpstream-804
Matrix_215ARF1ARF1, a transcription factor that binds to auxin response elementsUpstream-725
Matrix_224ERF1Not availableUpstream-684
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-914
Upstream-915
Matrix_315MYB111Not availableUpstream-1091
Upstream-1137
Matrix_331GBF1Not availableUpstream-1459
Matrix_344ATERF15;AT4G18450Not availableUpstream-703
Upstream-704
Matrix_374AT5G07580;AT5G61590Not availableUpstream-702
Upstream-703
Upstream-704
Matrix_408GATA12Not availableUpstream-559
Matrix_438AtbZIP63Not availableUpstream-1460
Matrix_448ATERF6Not availableUpstream-702
Upstream-703
Matrix_45DRNNot availableUpstream-703
Upstream-704
Matrix_456bZIP60Not availableUpstream-1460
Matrix_484ATERF13Not availableUpstream-703
Matrix_496ATMYB15Not availableUpstream-1088
Matrix_5AT5G51190;ERF104Not availableUpstream-703
Upstream-704
Matrix_517ERF12Not availableUpstream-931
Upstream-932
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-681
Upstream-684
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-775
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFUpstream-985
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsUpstream-45
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-740
Motif_202OPAQUE2ZM22ZOpaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02Upstream-916
Motif_216PYRIMIDINEBOXHVEPB1Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA inductionUpstream-758
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-784
Upstream-892
Motif_244ABRE-like binding site motifNot availableUpstream-918
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-787
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-918
Motif_383UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-33
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-1273
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-752
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-932
Motif_584UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-33
Motif_645BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-740
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-749
Upstream-750
Upstream-758
Upstream-759
Upstream-887
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-1091
Upstream-1137
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-750
Upstream-759