Matrix_101 | ERF5 | Not available | Upstream | -101 |
Matrix_106 | AT5G47390 | Not available | Upstream | -182 |
| | | Upstream | -183 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -99 |
| | | Upstream | -272 |
Matrix_146 | ORA47 | Not available | Upstream | -101 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -101 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -97 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -257 |
| | | Upstream | -258 |
| | | Upstream | -260 |
| | | Upstream | -261 |
| | | Upstream | -265 |
| | | Upstream | -419 |
Matrix_181 | Dof5.7 | Not available | Upstream | -130 |
Matrix_224 | ERF1 | Not available | Upstream | -100 |
Matrix_234 | RAP2.3 | Not available | Upstream | -101 |
Matrix_252 | RAP2.6 | Not available | Upstream | -101 |
Matrix_261 | ATERF-1 | Not available | Upstream | -101 |
Matrix_271 | AT3G16350 | Not available | Upstream | -182 |
Matrix_272 | DEAR4 | Not available | Upstream | -101 |
Matrix_287 | ERF2 | Not available | Upstream | -101 |
Matrix_295 | ERF1 | Not available | Upstream | -101 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -100 |
Matrix_334 | AT3G23230 | Not available | Upstream | -102 |
Matrix_343 | AT2G33710 | Not available | Upstream | -101 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -100 |
Matrix_360 | ORA59 | Not available | Upstream | -101 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -101 |
Matrix_378 | ATERF1 | Not available | Upstream | -101 |
Matrix_401 | MYB55 | Not available | Upstream | -260 |
| | | Upstream | -261 |
| | | Upstream | -422 |
Matrix_406 | ATERF-7 | Not available | Upstream | -99 |
Matrix_409 | DEAR3 | Not available | Upstream | -100 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -99 |
| | | Upstream | -102 |
Matrix_45 | DRN | Not available | Upstream | -101 |
Matrix_452 | MYB46 | Not available | Upstream | -251 |
| | | Upstream | -252 |
Matrix_455 | MYB111 | Not available | Upstream | -263 |
| | | Upstream | -264 |
| | | Upstream | -422 |
Matrix_462 | ATERF-8 | Not available | Upstream | -99 |
Matrix_473 | RRTF1 | Not available | Upstream | -101 |
Matrix_475 | AT5G64220 | Not available | Upstream | -98 |
Matrix_484 | ATERF13 | Not available | Upstream | -101 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -98 |
| | | Upstream | -101 |
Matrix_496 | ATMYB15 | Not available | Upstream | -257 |
| | | Upstream | -258 |
| | | Upstream | -260 |
| | | Upstream | -261 |
| | | Upstream | -419 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -100 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -102 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -257 |
| | | Upstream | -258 |
| | | Upstream | -260 |
| | | Upstream | -261 |
| | | Upstream | -265 |
| | | Upstream | -419 |
Matrix_517 | ERF12 | Not available | Upstream | -101 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -100 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -102 |
Matrix_91 | CRF3 | Not available | Upstream | -101 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -398 |
Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | Upstream | -185 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Upstream | -184 |
Motif_181 | IBOXCORENT | I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions | Upstream | -185 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Upstream | -341 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -76 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -341 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -341 |
| | | Upstream | -382 |
| | | Upstream | -422 |
| | | Upstream | -464 |
Motif_305 | SP1SV40 | SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | Upstream | -177 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -101 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -97 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -343 |
Motif_419 | MYB4 binding site motif | Not available | Upstream | -341 |
Motif_426 | MYB58;MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Upstream | -341 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -397 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -344 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -341 |