View conserved binding sites


Gene
BR03G22080
Description
No description available
Alias
Bra000360;Bra000360
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-101
Matrix_106AT5G47390Not availableUpstream-182
Upstream-183
Matrix_110ATABI4;AT3G57600Not availableUpstream-99
Upstream-272
Matrix_146ORA47Not availableUpstream-101
Matrix_147ERF3;AT1G80580Not availableUpstream-101
Matrix_171LBD3;LBD4Not availableUpstream-97
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-257
Upstream-258
Upstream-260
Upstream-261
Upstream-265
Upstream-419
Matrix_181Dof5.7Not availableUpstream-130
Matrix_224ERF1Not availableUpstream-100
Matrix_234RAP2.3Not availableUpstream-101
Matrix_252RAP2.6Not availableUpstream-101
Matrix_261ATERF-1Not availableUpstream-101
Matrix_271AT3G16350Not availableUpstream-182
Matrix_272DEAR4Not availableUpstream-101
Matrix_287ERF2Not availableUpstream-101
Matrix_295ERF1Not availableUpstream-101
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-100
Matrix_334AT3G23230Not availableUpstream-102
Matrix_343AT2G33710Not availableUpstream-101
Matrix_355ERF10;ERF11Not availableUpstream-100
Matrix_360ORA59Not availableUpstream-101
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-101
Matrix_378ATERF1Not availableUpstream-101
Matrix_401MYB55Not availableUpstream-260
Upstream-261
Upstream-422
Matrix_406ATERF-7Not availableUpstream-99
Matrix_409DEAR3Not availableUpstream-100
Matrix_426CRF1;CRF2Not availableUpstream-99
Upstream-102
Matrix_45DRNNot availableUpstream-101
Matrix_452MYB46Not availableUpstream-251
Upstream-252
Matrix_455MYB111Not availableUpstream-263
Upstream-264
Upstream-422
Matrix_462ATERF-8Not availableUpstream-99
Matrix_473RRTF1Not availableUpstream-101
Matrix_475AT5G64220Not availableUpstream-98
Matrix_484ATERF13Not availableUpstream-101
Matrix_493AT1G22985;AT1G71130Not availableUpstream-98
Upstream-101
Matrix_496ATMYB15Not availableUpstream-257
Upstream-258
Upstream-260
Upstream-261
Upstream-419
Matrix_50ATERF14;AT5G43410Not availableUpstream-100
Matrix_506DRNL;ATERF-4Not availableUpstream-102
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-257
Upstream-258
Upstream-260
Upstream-261
Upstream-265
Upstream-419
Matrix_517ERF12Not availableUpstream-101
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-100
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-102
Matrix_91CRF3Not availableUpstream-101
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-398
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-185
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-184
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsUpstream-185
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-341
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-76
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-341
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-341
Upstream-382
Upstream-422
Upstream-464
Motif_305SP1SV40SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)Upstream-177
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-101
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-97
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-343
Motif_419MYB4 binding site motifNot availableUpstream-341
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisUpstream-341
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-397
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-344
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-341