| Matrix_146 | ORA47 | Not available | Upstream | -392 |
| Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -392 |
| Matrix_261 | ATERF-1 | Not available | Upstream | -392 |
| Matrix_295 | ERF1 | Not available | Upstream | -392 |
| Matrix_362 | DEAR3 | Not available | Upstream | -323 |
| Matrix_396 | AP3 | Not available | Upstream | -252 |
| Matrix_406 | ATERF-7 | Not available | Upstream | -390 |
| Matrix_45 | DRN | Not available | Upstream | -392 |
| Matrix_484 | ATERF13 | Not available | Upstream | -392 |
| Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -391 |
| Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -393 |
| Matrix_517 | ERF12 | Not available | Upstream | -392 |
| Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -393 |
| Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -306 |
| Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -306 |
| Motif_223 | LTRE1HVBLT49 | LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGAC | Upstream | -453 |
| Motif_288 | NONAMERMOTIFTAH3H4 | Nonamer motif found in promoter of wheat histone genes H3 and H4 | Upstream | -307 |
| Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -306 |
| Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | Upstream | -323 |
| Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -253 |
| Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -515 |
| Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -49 |
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