View conserved binding sites


Gene
BR00G08530
Description
threonine-protein kinase Nek5
Alias
Bra035000;Bra035000
Binding siteNameDescriptionLocationPosition
Matrix_115AGL15Not availableUpstream-110
Matrix_202WRKY71;WRKY28;WRKY8Not availableUpstream-1886
Matrix_312ARF11;MP;ARF6;IAA21;ARF8;ARF4Not availableUpstream-867
Matrix_314WRKY65;WRKY14;WRKY35;WRKY69;WRKY16;ATWRKY52Not availableUpstream-1887
Matrix_316WRKY15;WRKY39;WRKY7;WRKY74Not availableUpstream-1887
Matrix_36RAV1_1RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsIntron1562
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-256
Upstream-254
Upstream-252
Upstream-250
Upstream-248
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-875
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-865
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-256
Upstream-254
Upstream-252
Upstream-250
Upstream-248
Upstream-246
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-864
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-864
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-255
Upstream-253
Upstream-251
Upstream-249
Upstream-247
Upstream-245
Upstream-243
Upstream-241
Upstream-239