View conserved binding sites


Gene
AT5G64740
Description
cellulose synthase 6
Alias
Q94JQ6;IXR2
Binding siteNameDescriptionLocationPosition
Matrix_196TCP20;AT5G41030Not availableUpstream-590
Matrix_232TCP23Not availableUpstream-591
Matrix_242AT2G25820;AT3G16280;AT4G32800;TINY2;tnyNot availableIntron280
Matrix_244DREB2CNot availableIntron279
Matrix_269FHY3/FAR1Not availableUpstream-470
Matrix_297TCP15Not availableUpstream-591
Matrix_348AT5G51910Not availableUpstream-592
Matrix_385DEAR4Not availableIntron279
Matrix_394DREB_UNot availableIntron279
Matrix_42AT2G45680Not availableUpstream-592
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableIntron279
Matrix_478AT1G01250Not availableIntron280
Matrix_48PINot availableUpstream-317
Matrix_61ATCBF3Not availableIntron279
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableIntron280
Matrix_92AT1G33760Not availableIntron279
Intron3360
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-410
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-458
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-939
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-409
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-407
Upstream-381
Motif_642SEF1MOTIFSEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) geneUpstream-945
Motif_667TATABOXOSPALBinding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoterUpstream-944
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-407
Upstream-405
Upstream-403
Upstream-401
Upstream-381
Upstream-379
Upstream-377
Upstream-375
Upstream-145