Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -590 |
Matrix_232 | TCP23 | Not available | Upstream | -591 |
Matrix_242 | AT2G25820;AT3G16280;AT4G32800;TINY2;tny | Not available | Intron | 280 |
Matrix_244 | DREB2C | Not available | Intron | 279 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -470 |
Matrix_297 | TCP15 | Not available | Upstream | -591 |
Matrix_348 | AT5G51910 | Not available | Upstream | -592 |
Matrix_385 | DEAR4 | Not available | Intron | 279 |
Matrix_394 | DREB_U | Not available | Intron | 279 |
Matrix_42 | AT2G45680 | Not available | Upstream | -592 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Intron | 279 |
Matrix_478 | AT1G01250 | Not available | Intron | 280 |
Matrix_48 | PI | Not available | Upstream | -317 |
Matrix_61 | ATCBF3 | Not available | Intron | 279 |
Matrix_73 | DEAR3;RAP2.9;RAP2.10 | Not available | Intron | 280 |
Matrix_92 | AT1G33760 | Not available | Intron | 279 |
| | | Intron | 3360 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -410 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -458 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -939 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -409 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -407 |
| | | Upstream | -381 |
Motif_642 | SEF1MOTIF | SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene | Upstream | -945 |
Motif_667 | TATABOXOSPAL | Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter | Upstream | -944 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -407 |
| | | Upstream | -405 |
| | | Upstream | -403 |
| | | Upstream | -401 |
| | | Upstream | -381 |
| | | Upstream | -379 |
| | | Upstream | -377 |
| | | Upstream | -375 |
| | | Upstream | -145 |