| Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -178 |
| Matrix_186 | FHY3 | Not available | Upstream | -178 |
| Matrix_269 | FHY3/FAR1 | Not available | Intron | 641 |
| | | Intron | 638 |
| | | Intron | 635 |
| Matrix_321 | HRD | Not available | Intron | 693 |
| Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Intron | 694 |
| Matrix_476 | bHLH115;bHLH34 | Not available | Upstream | -179 |
| Matrix_61 | ATCBF3 | Not available | Intron | 694 |
| Matrix_77 | PRR5 | Not available | Upstream | -177 |
| Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -179 |
| Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -180 |
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