View conserved binding sites


Gene
AT5G60100
Description
pseudo-response regulator 3
Alias
PRR3;Q9LVG4
Binding siteNameDescriptionLocationPosition
Matrix_109GBF3Not availableUpstream-955
Upstream-1019
Matrix_166TGA4Not availableUpstream-953
Matrix_192FHY3/FAR1Not availableUpstream-955
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-955
Matrix_278AtbZIP44Not availableUpstream-953
Upstream-1017
Matrix_296GBF2Not availableUpstream-955
Matrix_300bZIP68;bZIP16Not availableUpstream-955
Matrix_306TGA1TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-951
Matrix_331GBF1Not availableUpstream-955
Upstream-1019
Matrix_356PRR5Not availableUpstream-965
Matrix_399TGA1Not availableUpstream-952
Matrix_438AtbZIP63Not availableUpstream-952
Matrix_456bZIP60Not availableUpstream-954
Upstream-1018
Matrix_457TGA2Not availableUpstream-952
Matrix_488ABF1Not availableUpstream-953
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-953
Upstream-1017
Motif_244ABRE-like binding site motifNot availableUpstream-955
Upstream-973
Upstream-1019
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-937
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-938
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-955
Upstream-973
Upstream-1019
Motif_347OPAQUE2ZMB32opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC)Upstream-952
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-954
Upstream-1018
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorUpstream-194
Upstream-613
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-954
Upstream-1018
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-954
Upstream-1018
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-956
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-954
Upstream-1018
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-956
Upstream-974
Motif_95UPRE2ATXBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPRUpstream-952