View conserved binding sites


Gene
AT5G51330
Description
SWITCH1
Alias
Q9FGN8;SWI1
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-325
Matrix_109GBF3Not availableUpstream-478
Matrix_113ABI5Not availableUpstream-478
Matrix_120BEE2Not availableUpstream-326
Upstream-479
Matrix_122ABF1;AREB2Not availableUpstream-479
Matrix_14ZCW32;AT5G62610Not availableUpstream-327
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-475
Upstream-556
Matrix_153AP2Not availableUpstream-325
Matrix_156POC1Not availableUpstream-478
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-326
Upstream-560
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaIntron156
Intron139
Matrix_186FHY3Not availableIntron156
Intron140
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-326
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-323
Upstream-476
Matrix_24POC1Not availableUpstream-475
Matrix_264ATAREB1Not availableUpstream-323
Upstream-476
Matrix_300bZIP68;bZIP16Not availableUpstream-479
Matrix_301PIL5Not availableUpstream-321
Matrix_323BIM3Not availableUpstream-326
Matrix_330MYC2;TT8Not availableUpstream-326
Upstream-479
Upstream-560
Matrix_331GBF1Not availableUpstream-478
Matrix_332SPT;ALCNot availableUpstream-479
Matrix_338AP2Not availableUpstream-476
Matrix_339bHLH104Not availableUpstream-326
Matrix_356PRR5Not availableUpstream-319
Upstream-476
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-327
Matrix_369AT2G18300Not availableUpstream-324
Matrix_389ILR3Not availableUpstream-326
Upstream-479
Matrix_403BZR1Not availableUpstream-324
Upstream-477
Matrix_449BIM2Not availableUpstream-326
Matrix_476bHLH115;bHLH34Not availableUpstream-561
Matrix_480BES1Not availableUpstream-478
Upstream-559
Upstream-615
Matrix_49FHY3/FAR1Not availableIntron159
Intron142
Matrix_53MYC3Not availableUpstream-324
Upstream-562
Matrix_55PIF3Not availableUpstream-478
Matrix_7PIF4Not availableUpstream-326
Upstream-479
Matrix_77PRR5Not availableUpstream-324
Matrix_80BIM1Not availableUpstream-325
Upstream-327
Upstream-561
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-327
Upstream-480
Upstream-561
Upstream-616
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-326
Upstream-479
Upstream-480
Upstream-560
Upstream-561
Upstream-615
Upstream-1518
Motif_244ABRE-like binding site motifNot availableUpstream-478
Upstream-559
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-478
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-84
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-479
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-316
Upstream-482
Upstream-563
Upstream-614
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-317
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-478
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-274
Upstream-276
Upstream-278
Upstream-280