| Matrix_101 | ERF5 | Not available | Upstream | -155 |
| Matrix_151 | ASIL1 | Not available | Upstream | -156 |
| Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -156 |
| | | Upstream | -157 |
| | | Upstream | -158 |
| Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -156 |
| Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -156 |
| | | Upstream | -157 |
| Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -156 |
| Matrix_433 | ATERF1 | Not available | Upstream | -156 |
| Matrix_448 | ATERF6 | Not available | Upstream | -156 |
| Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -156 |
| | | Upstream | -157 |
| Matrix_59 | AT4G00238;AT4G00250 | Not available | Upstream | -156 |
| Motif_1 | GT1CORE | Critical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex | Upstream | -1595 |
| | | Upstream | -1674 |
| Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Upstream | -22 |
| Motif_285 | HDZIP2ATATHB2 | Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene | Upstream | -1013 |
| Motif_34 | LECPLEACS2 | Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene | Upstream | -814 |
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