Matrix_104 | PI | Not available | Upstream | -117 |
| | | Upstream | -118 |
Matrix_109 | GBF3 | Not available | Upstream | -119 |
| | | Upstream | -120 |
Matrix_113 | ABI5 | Not available | Upstream | -117 |
| | | Upstream | -118 |
| | | Upstream | -119 |
| | | Upstream | -120 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -117 |
| | | Upstream | -118 |
Matrix_129 | ABF1 | Not available | Upstream | -118 |
| | | Upstream | -119 |
Matrix_134 | ABF1 | Not available | Upstream | -119 |
| | | Upstream | -120 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -119 |
| | | Upstream | -120 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -114 |
| | | Upstream | -115 |
Matrix_156 | POC1 | Not available | Upstream | -119 |
| | | Upstream | -120 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -119 |
| | | Upstream | -120 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -115 |
| | | Upstream | -116 |
Matrix_214 | AP1 | Not available | Upstream | -116 |
| | | Upstream | -117 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -119 |
| | | Upstream | -120 |
Matrix_225 | MYB52 | Not available | Upstream | -132 |
Matrix_24 | POC1 | Not available | Upstream | -114 |
| | | Upstream | -115 |
Matrix_264 | ATAREB1 | Not available | Upstream | -115 |
| | | Upstream | -116 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -119 |
| | | Upstream | -120 |
Matrix_331 | GBF1 | Not available | Upstream | -119 |
| | | Upstream | -120 |
Matrix_332 | SPT;ALC | Not available | Upstream | -119 |
| | | Upstream | -120 |
Matrix_338 | AP2 | Not available | Upstream | -115 |
| | | Upstream | -116 |
Matrix_356 | PRR5 | Not available | Upstream | -111 |
| | | Upstream | -112 |
| | | Upstream | -115 |
| | | Upstream | -116 |
Matrix_403 | BZR1 | Not available | Upstream | -116 |
| | | Upstream | -117 |
Matrix_443 | AGL15 | Not available | Upstream | -116 |
| | | Upstream | -117 |
Matrix_480 | BES1 | Not available | Upstream | -118 |
Matrix_488 | ABF1 | Not available | Upstream | -117 |
| | | Upstream | -118 |
Matrix_53 | MYC3 | Not available | Upstream | -120 |
| | | Upstream | -121 |
Matrix_55 | PIF3 | Not available | Upstream | -117 |
| | | Upstream | -118 |
Matrix_7 | PIF4 | Not available | Upstream | -120 |
| | | Upstream | -121 |
Motif_163 | BOXCPSAS1 | Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1 | Upstream | -30 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -120 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -120 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -119 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -119 |
| | | Upstream | -120 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -118 |
| | | Upstream | -120 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -119 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -120 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -120 |
Motif_382 | CATATGGMSAUR | Sequence found in NDE element in soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness | Upstream | -388 |
Motif_422 | SP8BFIBSP8BIB | One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b | Upstream | -356 |
| | | Upstream | -379 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -120 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -137 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -121 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -121 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -120 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -121 |
Motif_645 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -288 |
Motif_79 | UPRMOTIFIIAT | Motif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc | Upstream | -122 |
Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | Upstream | -157 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -119 |