View conserved binding sites


Gene
AT5G15840
Description
B-box type zinc finger protein with CCT domain
Alias
Q39057;CONSTANS
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-117
Upstream-118
Matrix_109GBF3Not availableUpstream-119
Upstream-120
Matrix_113ABI5Not availableUpstream-117
Upstream-118
Upstream-119
Upstream-120
Matrix_122ABF1;AREB2Not availableUpstream-117
Upstream-118
Matrix_129ABF1Not availableUpstream-118
Upstream-119
Matrix_134ABF1Not availableUpstream-119
Upstream-120
Matrix_145GBF4;AT5G44080Not availableUpstream-119
Upstream-120
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-114
Upstream-115
Matrix_156POC1Not availableUpstream-119
Upstream-120
Matrix_192FHY3/FAR1Not availableUpstream-119
Upstream-120
Matrix_194HYH;HY5Not availableUpstream-115
Upstream-116
Matrix_214AP1Not availableUpstream-116
Upstream-117
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-119
Upstream-120
Matrix_225MYB52Not availableUpstream-132
Matrix_24POC1Not availableUpstream-114
Upstream-115
Matrix_264ATAREB1Not availableUpstream-115
Upstream-116
Matrix_300bZIP68;bZIP16Not availableUpstream-119
Upstream-120
Matrix_331GBF1Not availableUpstream-119
Upstream-120
Matrix_332SPT;ALCNot availableUpstream-119
Upstream-120
Matrix_338AP2Not availableUpstream-115
Upstream-116
Matrix_356PRR5Not availableUpstream-111
Upstream-112
Upstream-115
Upstream-116
Matrix_403BZR1Not availableUpstream-116
Upstream-117
Matrix_443AGL15Not availableUpstream-116
Upstream-117
Matrix_480BES1Not availableUpstream-118
Matrix_488ABF1Not availableUpstream-117
Upstream-118
Matrix_53MYC3Not availableUpstream-120
Upstream-121
Matrix_55PIF3Not availableUpstream-117
Upstream-118
Matrix_7PIF4Not availableUpstream-120
Upstream-121
Motif_163BOXCPSAS1Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1Upstream-30
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-120
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-120
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-119
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-119
Upstream-120
Motif_244ABRE-like binding site motifNot availableUpstream-118
Upstream-120
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-119
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-120
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-120
Motif_382CATATGGMSAURSequence found in NDE element in soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsivenessUpstream-388
Motif_422SP8BFIBSP8BIBOne of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8bUpstream-356
Upstream-379
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-120
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-137
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-121
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-121
Motif_638ABRE binding site motifNot availableUpstream-120
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-121
Motif_645BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-288
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-122
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-157
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-119