View conserved binding sites


Gene
AT5G12330
Description
Lateral root primordium (LRP) protein-related
Alias
LRP1;Q94CK9
Binding siteNameDescriptionLocationPosition
Matrix_115AGL15Not availableUpstream-169
Upstream-170
Matrix_171LBD3;LBD4Not availableUpstream-576
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-569
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-585
Matrix_186FHY3Not availableUpstream-584
Matrix_190ATERF1Not availableUpstream-1509
Matrix_196TCP20;AT5G41030Not availableUpstream-631
Upstream-1513
Matrix_269FHY3/FAR1Not availableUpstream-484
Matrix_277RAP2.6Not availableUpstream-1528
Matrix_297TCP15Not availableUpstream-1509
Matrix_321HRDNot availableUpstream-1509
Matrix_343AT2G33710Not availableUpstream-1531
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-246
Upstream-485
Matrix_374AT5G07580;AT5G61590Not availableUpstream-1509
Matrix_396AP3Not availableIntron82
Matrix_401MYB55Not availableUpstream-569
Matrix_405DREB2CNot availableUpstream-1530
Matrix_414AGL15Not availableUpstream-205
Matrix_476bHLH115;bHLH34Not availableUpstream-587
Matrix_48PINot availableUpstream-172
Upstream-173
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-569
Matrix_77PRR5Not availableUpstream-584
Matrix_90BEE1;BEE3;AT3G07340;AT5G48560;AT5G50915Not availableUpstream-581
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-181
Upstream-358
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-586
Upstream-672
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-345
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-590
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-161
Upstream-357
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-161
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-347