Matrix_115 | AGL15 | Not available | Upstream | -169 |
| | | Upstream | -170 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -576 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -569 |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -585 |
Matrix_186 | FHY3 | Not available | Upstream | -584 |
Matrix_190 | ATERF1 | Not available | Upstream | -1509 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -631 |
| | | Upstream | -1513 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -484 |
Matrix_277 | RAP2.6 | Not available | Upstream | -1528 |
Matrix_297 | TCP15 | Not available | Upstream | -1509 |
Matrix_321 | HRD | Not available | Upstream | -1509 |
Matrix_343 | AT2G33710 | Not available | Upstream | -1531 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Upstream | -246 |
| | | Upstream | -485 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -1509 |
Matrix_396 | AP3 | Not available | Intron | 82 |
Matrix_401 | MYB55 | Not available | Upstream | -569 |
Matrix_405 | DREB2C | Not available | Upstream | -1530 |
Matrix_414 | AGL15 | Not available | Upstream | -205 |
Matrix_476 | bHLH115;bHLH34 | Not available | Upstream | -587 |
Matrix_48 | PI | Not available | Upstream | -172 |
| | | Upstream | -173 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -569 |
Matrix_77 | PRR5 | Not available | Upstream | -584 |
Matrix_90 | BEE1;BEE3;AT3G07340;AT5G48560;AT5G50915 | Not available | Upstream | -581 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -181 |
| | | Upstream | -358 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -586 |
| | | Upstream | -672 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -345 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -590 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -161 |
| | | Upstream | -357 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -161 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -347 |