View conserved binding sites


Gene
AT5G11190
Description
Integrase-type DNA-binding superfamily protein
Alias
shine2;Q9LFN7
Binding siteNameDescriptionLocationPosition
Matrix_242AT2G25820;AT3G16280;AT4G32800;TINY2;tnyNot availableUpstream-916
Matrix_244DREB2CNot availableUpstream-917
Matrix_385DEAR4Not availableUpstream-917
Matrix_394DREB_UNot availableUpstream-917
Matrix_401MYB55Not availableUpstream-921
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-917
Matrix_478AT1G01250Not availableUpstream-916
Matrix_61ATCBF3Not availableUpstream-917
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-916
Matrix_92AT1G33760Not availableUpstream-917
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-110
Motif_166RAP2.2Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leavesUpstream-889
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-112
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-915
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-915
Motif_54LTREATLTI78Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thalianaUpstream-915
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-915
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-915
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-105