Matrix_102 | WRKY21 | Not available | Upstream | -271 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -235 |
Matrix_109 | GBF3 | Not available | Upstream | -1212 |
Matrix_120 | BEE2 | Not available | Upstream | -236 |
Matrix_128 | TGA2 | Not available | Upstream | -881 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -237 |
Matrix_153 | AP2 | Not available | Upstream | -235 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -236 |
Matrix_166 | TGA4 | Not available | Upstream | -881 |
Matrix_17 | WRKY22 | Not available | Upstream | -271 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -295 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -236 |
Matrix_202 | WRKY71;WRKY28;WRKY8 | Not available | Upstream | -271 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -295 |
Matrix_228 | TGA2 | Not available | Upstream | -882 |
Matrix_233 | MYC3 | Not available | Upstream | -237 |
Matrix_263 | WRKY33;WRKY19;WRKY32 | Not available | Upstream | -271 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -3 |
Matrix_278 | AtbZIP44 | Not available | Upstream | -1210 |
Matrix_3 | WRKY48 | Not available | Upstream | -271 |
Matrix_311 | TGA1 | Not available | Upstream | -881 |
Matrix_320 | MYC4 | Not available | Upstream | -237 |
Matrix_323 | BIM3 | Not available | Upstream | -236 |
Matrix_325 | WRKY4;WRKY3;WRKY58;ATWRKY34;WRKY20;ATWRKY2 | Not available | Upstream | -370 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -236 |
Matrix_331 | GBF1 | Not available | Upstream | -1212 |
Matrix_332 | SPT;ALC | Not available | Upstream | -237 |
Matrix_365 | AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1 | Not available | Upstream | -237 |
Matrix_369 | AT2G18300 | Not available | Upstream | -234 |
| | | Upstream | -236 |
Matrix_370 | WRKY50;WRKY51 | Not available | Upstream | -271 |
Matrix_389 | ILR3 | Not available | Upstream | -236 |
Matrix_399 | TGA1 | Not available | Upstream | -880 |
| | | Upstream | -1209 |
Matrix_415 | WRKY27 | Not available | Upstream | -271 |
Matrix_419 | TGA9;PAN;TGA6;bZIP65 | Not available | Upstream | -881 |
| | | Upstream | -883 |
Matrix_437 | MYC2 | Not available | Upstream | -237 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -1209 |
Matrix_449 | BIM2 | Not available | Upstream | -236 |
Matrix_457 | TGA2 | Not available | Upstream | -880 |
Matrix_465 | MYC4 | Not available | Upstream | -236 |
Matrix_476 | bHLH115;bHLH34 | Not available | Upstream | -237 |
Matrix_480 | BES1 | Not available | Upstream | -236 |
Matrix_53 | MYC3 | Not available | Upstream | -238 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -1210 |
Matrix_75 | WRKY29 | Not available | Upstream | -271 |
Matrix_80 | BIM1 | Not available | Upstream | -237 |
Matrix_90 | BEE1;BEE3;AT3G07340;AT5G48560;AT5G50915 | Not available | Upstream | -237 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -236 |
| | | Upstream | -238 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -237 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -1438 |
| | | Upstream | -1439 |
| | | Upstream | -1601 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -236 |
| | | Upstream | -237 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -295 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -218 |
Motif_33 | ACGTCBOX | C-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding site | Upstream | -883 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -237 |
| | | Upstream | -295 |
| | | Upstream | -1212 |
Motif_362 | TGA2 octamer | palindromic octamer found enriched in chip-chip regions for TGA2 | Upstream | -880 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -373 |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Upstream | -695 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -882 |
| | | Upstream | -884 |
| | | Upstream | -1211 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -373 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -239 |
Motif_525 | CRTDREHVCBF2 | Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; HvCBF2 bound to a (G/a)(T/c)CGAC core motif; DNA binding is regulated by temperature | Upstream | -319 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -296 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -1213 |
Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | Upstream | -535 |
| | | Upstream | -536 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -882 |
| | | Upstream | -884 |
| | | Upstream | -1211 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -319 |
| | | Upstream | -373 |
| | | Upstream | -1697 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -296 |
Motif_630 | WBOXNTCHN48 | W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco | Upstream | -272 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -295 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -50 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -294 |