View conserved binding sites


Gene
AT5G08790
Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Alias
anac081;Q9C598
Binding siteNameDescriptionLocationPosition
Matrix_102WRKY21Not availableUpstream-271
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-235
Matrix_109GBF3Not availableUpstream-1212
Matrix_120BEE2Not availableUpstream-236
Matrix_128TGA2Not availableUpstream-881
Matrix_14ZCW32;AT5G62610Not availableUpstream-237
Matrix_153AP2Not availableUpstream-235
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-236
Matrix_166TGA4Not availableUpstream-881
Matrix_17WRKY22Not availableUpstream-271
Matrix_192FHY3/FAR1Not availableUpstream-295
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-236
Matrix_202WRKY71;WRKY28;WRKY8Not availableUpstream-271
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-295
Matrix_228TGA2Not availableUpstream-882
Matrix_233MYC3Not availableUpstream-237
Matrix_263WRKY33;WRKY19;WRKY32Not availableUpstream-271
Matrix_269FHY3/FAR1Not availableUpstream-3
Matrix_278AtbZIP44Not availableUpstream-1210
Matrix_3WRKY48Not availableUpstream-271
Matrix_311TGA1Not availableUpstream-881
Matrix_320MYC4Not availableUpstream-237
Matrix_323BIM3Not availableUpstream-236
Matrix_325WRKY4;WRKY3;WRKY58;ATWRKY34;WRKY20;ATWRKY2Not availableUpstream-370
Matrix_330MYC2;TT8Not availableUpstream-236
Matrix_331GBF1Not availableUpstream-1212
Matrix_332SPT;ALCNot availableUpstream-237
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-237
Matrix_369AT2G18300Not availableUpstream-234
Upstream-236
Matrix_370WRKY50;WRKY51Not availableUpstream-271
Matrix_389ILR3Not availableUpstream-236
Matrix_399TGA1Not availableUpstream-880
Upstream-1209
Matrix_415WRKY27Not availableUpstream-271
Matrix_419TGA9;PAN;TGA6;bZIP65Not availableUpstream-881
Upstream-883
Matrix_437MYC2Not availableUpstream-237
Matrix_438AtbZIP63Not availableUpstream-1209
Matrix_449BIM2Not availableUpstream-236
Matrix_457TGA2Not availableUpstream-880
Matrix_465MYC4Not availableUpstream-236
Matrix_476bHLH115;bHLH34Not availableUpstream-237
Matrix_480BES1Not availableUpstream-236
Matrix_53MYC3Not availableUpstream-238
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-1210
Matrix_75WRKY29Not availableUpstream-271
Matrix_80BIM1Not availableUpstream-237
Matrix_90BEE1;BEE3;AT3G07340;AT5G48560;AT5G50915Not availableUpstream-237
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-236
Upstream-238
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-237
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-1438
Upstream-1439
Upstream-1601
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-236
Upstream-237
Motif_244ABRE-like binding site motifNot availableUpstream-295
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-218
Motif_33ACGTCBOXC-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding siteUpstream-883
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-237
Upstream-295
Upstream-1212
Motif_362TGA2 octamerpalindromic octamer found enriched in chip-chip regions for TGA2Upstream-880
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-373
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Upstream-695
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-882
Upstream-884
Upstream-1211
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-373
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-239
Motif_525CRTDREHVCBF2Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; HvCBF2 bound to a (G/a)(T/c)CGAC core motif; DNA binding is regulated by temperatureUpstream-319
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-296
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-1213
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneUpstream-535
Upstream-536
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-882
Upstream-884
Upstream-1211
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-319
Upstream-373
Upstream-1697
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-296
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-272
Motif_638ABRE binding site motifNot availableUpstream-295
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-50
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-294