View conserved binding sites


Gene
AT4G14540
Description
nuclear factor Y, subunit B3
Alias
O23310;NF-YB3
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-98
Matrix_113ABI5Not availableUpstream-96
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-101
Matrix_120BEE2Not availableUpstream-97
Matrix_122ABF1;AREB2Not availableUpstream-97
Matrix_129ABF1Not availableUpstream-97
Matrix_145GBF4;AT5G44080Not availableUpstream-96
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-101
Matrix_156POC1Not availableUpstream-98
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-97
Matrix_187CDC5Not availableUpstream-611
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-100
Matrix_192FHY3/FAR1Not availableUpstream-96
Matrix_194HYH;HY5Not availableUpstream-100
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-97
Matrix_229CDC5A cdc5+ homolog of a higher plant, Arabidopsis thalianaUpstream-611
Matrix_24POC1Not availableUpstream-101
Matrix_247PIF3Not availableUpstream-97
Matrix_264ATAREB1Not availableUpstream-97
Matrix_300bZIP68;bZIP16Not availableUpstream-96
Matrix_301PIL5Not availableUpstream-96
Matrix_330MYC2;TT8Not availableUpstream-97
Matrix_331GBF1Not availableUpstream-96
Matrix_332SPT;ALCNot availableUpstream-97
Matrix_338AP2Not availableUpstream-100
Matrix_345POC1Not availableUpstream-101
Matrix_349CDC5Not availableUpstream-611
Matrix_356PRR5Not availableUpstream-104
Matrix_389ILR3Not availableUpstream-97
Matrix_403BZR1Not availableUpstream-99
Matrix_443AGL15Not availableUpstream-99
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-399
Matrix_465MYC4Not availableUpstream-97
Matrix_48PINot availableUpstream-463
Matrix_480BES1Not availableUpstream-97
Matrix_55PIF3Not availableUpstream-98
Matrix_7PIF4Not availableUpstream-97
Matrix_77PRR5Not availableUpstream-98
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-86
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-126
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-72
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-95
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsUpstream-127
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-57
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-95
Motif_197HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expressionUpstream-97
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-96
Upstream-95
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-57
Motif_244ABRE-like binding site motifNot availableUpstream-95
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-95
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-76
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-40
Motif_310ANAERO3CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curatorUpstream-89
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-57
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-95
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-398
Motif_395RHE_elementFunctional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution PatternsUpstream-91
Motif_419MYB4 binding site motifNot availableUpstream-102
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-96
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-94
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-73
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-94