View conserved binding sites


Gene
AT4G13930
Description
serine hydroxymethyltransferase 4
Alias
O23254;serine hydroxymethyltransferase 4
Binding siteNameDescriptionLocationPosition
Matrix_127AtMYB15More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-1645
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-1645
Matrix_181Dof5.7Not availableUpstream-36
Matrix_242AT2G25820;AT3G16280;AT4G32800;TINY2;tnyNot availableIntron1055
Matrix_244DREB2CNot availableIntron1056
Matrix_313ATMYB65;MYB33Not availableUpstream-85
Matrix_366ARR14Not availableUpstream-1786
Matrix_39AP1Not availableUpstream-37
Matrix_394DREB_UNot availableIntron1056
Matrix_414AGL15Not availableUpstream-64
Upstream-71
Matrix_447RVE1Not availableUpstream-1225
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableIntron1056
Matrix_47AtMYB77Not availableUpstream-83
Matrix_478AT1G01250Not availableIntron1055
Matrix_48PINot availableUpstream-35
Upstream-36
Upstream-39
Upstream-40
Matrix_490AtMYB77;ATMYB44Not availableUpstream-87
Matrix_496ATMYB15Not availableUpstream-1645
Matrix_68AtMYB77More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14: 273-84Upstream-83
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableIntron1055
Matrix_92AT1G33760Not availableIntron1056
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-66
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-89
Motif_274MYB1 binding site motifIsolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoproteinUpstream-179
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-90
Upstream-179
Motif_502MYB98The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98Upstream-919
Upstream-1732
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-166
Upstream-1464
Upstream-1648
Motif_525CRTDREHVCBF2Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; HvCBF2 bound to a (G/a)(T/c)CGAC core motif; DNA binding is regulated by temperatureUpstream-646
Motif_530CPBCSPORThe sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) geneUpstream-1993
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-646
Upstream-1673
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-166
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-67
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-93