| Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Downstream | 1225 |
| Matrix_242 | AT2G25820;AT3G16280;AT4G32800;TINY2;tny | Not available | Downstream | 1454 |
| Matrix_244 | DREB2C | Not available | Downstream | 1455 |
| Matrix_385 | DEAR4 | Not available | Downstream | 1455 |
| Matrix_394 | DREB_U | Not available | Downstream | 1455 |
| Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Downstream | 1455 |
| Matrix_456 | bZIP60 | Not available | Downstream | 1222 |
| Matrix_478 | AT1G01250 | Not available | Downstream | 1454 |
| Matrix_73 | DEAR3;RAP2.9;RAP2.10 | Not available | Downstream | 1454 |
| Matrix_92 | AT1G33760 | Not available | Downstream | 1455 |
| Motif_34 | LECPLEACS2 | Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene | Upstream | -236 |
| Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -186 |
| Motif_667 | TATABOXOSPAL | Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter | Upstream | -331 |
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