View conserved binding sites


Gene
AT4G02380
Description
senescence-associated gene 21
Alias
Arabidopsis thaliana late embryogenensis abundant like 5
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-62
Upstream-63
Matrix_110ATABI4;AT3G57600Not availableUpstream-64
Upstream-65
Matrix_119RRTF1Not availableUpstream-66
Upstream-67
Matrix_146ORA47Not availableUpstream-62
Upstream-63
Matrix_147ERF3;AT1G80580Not availableUpstream-64
Upstream-65
Matrix_190ATERF1Not availableUpstream-61
Upstream-62
Upstream-64
Matrix_224ERF1Not availableUpstream-63
Matrix_234RAP2.3Not availableUpstream-61
Upstream-62
Upstream-63
Upstream-65
Upstream-66
Matrix_252RAP2.6Not availableUpstream-62
Upstream-65
Matrix_261ATERF-1Not availableUpstream-63
Upstream-64
Matrix_272DEAR4Not availableUpstream-62
Upstream-63
Matrix_287ERF2Not availableUpstream-62
Upstream-63
Matrix_295ERF1Not availableUpstream-64
Upstream-65
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-63
Upstream-64
Upstream-66
Upstream-67
Matrix_334AT3G23230Not availableUpstream-63
Matrix_343AT2G33710Not availableUpstream-62
Upstream-63
Upstream-65
Upstream-66
Matrix_344ATERF15;AT4G18450Not availableUpstream-64
Matrix_355ERF10;ERF11Not availableUpstream-63
Upstream-64
Matrix_360ORA59Not availableUpstream-64
Upstream-65
Matrix_374AT5G07580;AT5G61590Not availableUpstream-63
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-63
Upstream-64
Upstream-1124
Matrix_378ATERF1Not availableUpstream-62
Upstream-63
Upstream-65
Upstream-66
Matrix_406ATERF-7Not availableUpstream-64
Upstream-65
Matrix_409DEAR3Not availableUpstream-63
Upstream-64
Matrix_414AGL15Not availableUpstream-196
Upstream-201
Matrix_426CRF1;CRF2Not availableUpstream-63
Upstream-66
Matrix_45DRNNot availableUpstream-64
Upstream-65
Matrix_462ATERF-8Not availableUpstream-64
Upstream-65
Matrix_473RRTF1Not availableUpstream-62
Upstream-63
Upstream-65
Upstream-66
Matrix_484ATERF13Not availableUpstream-64
Upstream-65
Matrix_493AT1G22985;AT1G71130Not availableUpstream-63
Upstream-64
Upstream-66
Upstream-67
Matrix_50ATERF14;AT5G43410Not availableUpstream-63
Upstream-64
Matrix_506DRNL;ATERF-4Not availableUpstream-63
Upstream-64
Upstream-66
Upstream-67
Matrix_517ERF12Not availableUpstream-64
Upstream-65
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-63
Upstream-64
Upstream-66
Upstream-67
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-63
Matrix_91CRF3Not availableUpstream-63
Upstream-64
Upstream-66
Upstream-67
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-226
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-208
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-215
Upstream-345
Upstream-346
Upstream-1299
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-1561
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-941
Upstream-1477
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-65
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Upstream-214
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-1241
Upstream-1244
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-150