| Matrix_143 | GATA14;GATA6;GATA5 | Not available | Intron | 549 |
| Matrix_184 | AGL15 | Not available | Intron | 626 |
| | | Intron | 624 |
| | | Intron | 620 |
| | | Intron | 454 |
| Matrix_203 | GATA9;GATA12 | Not available | Intron | 550 |
| Motif_189 | CMSRE1IBSPOA | CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene | Upstream | -1055 |
| | | Upstream | -1818 |
| Motif_443 | KN1;BP | The knotted1-like homeobox gene BREVIPEDICELLUS regulates cell differentiation by modulating metabolic pathways. Selective interaction of plant homeodomain proteins mediates high DNA-binding affinity | Upstream | -1171 |
| Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -1088 |
| | | Upstream | -1098 |
| | | Upstream | -1879 |
| Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -718 |
| Motif_94 | UP1ATMSD | Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -1876 |
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