View conserved binding sites


Gene
AT3G63210
Description
Protein of unknown function (DUF581)
Alias
MARD1
Binding siteNameDescriptionLocationPosition
Matrix_144AT5G08330;AT5G23280Not availableUpstream-940
Matrix_184AGL15Not availableUpstream-462
Matrix_294MEE35Not availableUpstream-942
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-1598
Matrix_40TCP2Not availableUpstream-940
Matrix_414AGL15Not availableUpstream-48
Upstream-228
Upstream-235
Motif_150RBCSCONSENSUSrbcS general consensus sequence; AATCCAA or AATCCAACUpstream-968
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFUpstream-672
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-948
Motif_22RYREPEATLEGUMINBOXRY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybeanUpstream-322
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-948
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-999
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-954
Upstream-1901
Motif_511RYREPEATGMGY2RY repeat motif (CATGCAT); Present in the 5' region of the soybean glycinin gene (Gy2)Upstream-322
Motif_640RYREPEATBNNAPARY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABREUpstream-323
Upstream-325
Upstream-553
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-673
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-673
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGADownstream1066
Upstream-271
Upstream-273
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-796