Matrix_101 | ERF5 | Not available | Upstream | -1341 |
| | | Upstream | -1344 |
Matrix_146 | ORA47 | Not available | Upstream | -1341 |
| | | Upstream | -1742 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -1344 |
Matrix_181 | Dof5.7 | Not available | Upstream | -130 |
Matrix_216 | TCP16 | Not available | Upstream | -514 |
Matrix_232 | TCP23 | Not available | Upstream | -515 |
Matrix_234 | RAP2.3 | Not available | Upstream | -1344 |
| | | Upstream | -1742 |
Matrix_252 | RAP2.6 | Not available | Upstream | -1344 |
| | | Upstream | -1742 |
Matrix_261 | ATERF-1 | Not available | Upstream | -762 |
| | | Upstream | -1341 |
| | | Upstream | -1344 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -514 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -481 |
Matrix_272 | DEAR4 | Not available | Upstream | -1344 |
| | | Upstream | -1742 |
Matrix_295 | ERF1 | Not available | Upstream | -1344 |
Matrix_297 | TCP15 | Not available | Upstream | -512 |
| | | Upstream | -515 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -761 |
Matrix_343 | AT2G33710 | Not available | Upstream | -762 |
Matrix_348 | AT5G51910 | Not available | Upstream | -513 |
| | | Upstream | -514 |
| | | Upstream | -817 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -761 |
Matrix_360 | ORA59 | Not available | Upstream | -1344 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Upstream | -475 |
| | | Upstream | -1662 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -762 |
| | | Upstream | -1341 |
| | | Upstream | -1344 |
| | | Upstream | -1743 |
Matrix_378 | ATERF1 | Not available | Upstream | -762 |
| | | Upstream | -1344 |
| | | Upstream | -1742 |
Matrix_406 | ATERF-7 | Not available | Upstream | -1342 |
Matrix_409 | DEAR3 | Not available | Upstream | -1340 |
| | | Upstream | -1343 |
Matrix_42 | AT2G45680 | Not available | Upstream | -514 |
Matrix_45 | DRN | Not available | Upstream | -1344 |
Matrix_462 | ATERF-8 | Not available | Upstream | -760 |
| | | Upstream | -1342 |
Matrix_484 | ATERF13 | Not available | Upstream | -1344 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -1344 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -761 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -763 |
Matrix_517 | ERF12 | Not available | Upstream | -1344 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -1345 |
Matrix_91 | CRF3 | Not available | Upstream | -762 |
| | | Upstream | -1341 |
| | | Upstream | -1344 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -342 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -490 |
Motif_323 | MYB1LEPR | Tomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG)) | Upstream | -206 |
| | | Upstream | -1571 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -491 |
Motif_348 | WBBOXPCWRKY1 | WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in Arabidopsis | Upstream | -781 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -537 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Upstream | -378 |
Motif_536 | TBOXATGAPB | Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | Upstream | -785 |
Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Upstream | -480 |
| | | Upstream | -483 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -491 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -343 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -540 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -5 |
| | | Upstream | -59 |