View conserved binding sites


Gene
AT3G60030
Description
squamosa promoter-binding protein-like 12
Alias
Q9S7P5;squamosa promoter-binding protein-like 12
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-1341
Upstream-1344
Matrix_146ORA47Not availableUpstream-1341
Upstream-1742
Matrix_147ERF3;AT1G80580Not availableUpstream-1344
Matrix_181Dof5.7Not availableUpstream-130
Matrix_216TCP16Not availableUpstream-514
Matrix_232TCP23Not availableUpstream-515
Matrix_234RAP2.3Not availableUpstream-1344
Upstream-1742
Matrix_252RAP2.6Not availableUpstream-1344
Upstream-1742
Matrix_261ATERF-1Not availableUpstream-762
Upstream-1341
Upstream-1344
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-514
Matrix_269FHY3/FAR1Not availableUpstream-481
Matrix_272DEAR4Not availableUpstream-1344
Upstream-1742
Matrix_295ERF1Not availableUpstream-1344
Matrix_297TCP15Not availableUpstream-512
Upstream-515
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-761
Matrix_343AT2G33710Not availableUpstream-762
Matrix_348AT5G51910Not availableUpstream-513
Upstream-514
Upstream-817
Matrix_355ERF10;ERF11Not availableUpstream-761
Matrix_360ORA59Not availableUpstream-1344
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-475
Upstream-1662
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-762
Upstream-1341
Upstream-1344
Upstream-1743
Matrix_378ATERF1Not availableUpstream-762
Upstream-1344
Upstream-1742
Matrix_406ATERF-7Not availableUpstream-1342
Matrix_409DEAR3Not availableUpstream-1340
Upstream-1343
Matrix_42AT2G45680Not availableUpstream-514
Matrix_45DRNNot availableUpstream-1344
Matrix_462ATERF-8Not availableUpstream-760
Upstream-1342
Matrix_484ATERF13Not availableUpstream-1344
Matrix_493AT1G22985;AT1G71130Not availableUpstream-1344
Matrix_50ATERF14;AT5G43410Not availableUpstream-761
Matrix_506DRNL;ATERF-4Not availableUpstream-763
Matrix_517ERF12Not availableUpstream-1344
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-1345
Matrix_91CRF3Not availableUpstream-762
Upstream-1341
Upstream-1344
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-342
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-490
Motif_323MYB1LEPRTomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG))Upstream-206
Upstream-1571
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-491
Motif_348WBBOXPCWRKY1WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in ArabidopsisUpstream-781
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-537
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-378
Motif_536TBOXATGAPBTbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thalianaUpstream-785
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-480
Upstream-483
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-491
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-343
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-540
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-5
Upstream-59