| Matrix_109 | GBF3 | Not available | Upstream | -1318 |
| Matrix_166 | TGA4 | Not available | Upstream | -284 |
| Matrix_192 | FHY3/FAR1 | Not available | Upstream | -1318 |
| Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -1318 |
| Matrix_279 | HRS1 | Not available | Upstream | -68 |
| Matrix_296 | GBF2 | Not available | Upstream | -1318 |
| Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -1318 |
| Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1315 |
| Matrix_306 | TGA1 | TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -282 |
| Matrix_331 | GBF1 | Not available | Upstream | -1318 |
| Matrix_361 | AT1G25550 | Not available | Upstream | -67 |
| Matrix_399 | TGA1 | Not available | Upstream | -283 |
| Matrix_419 | TGA9;PAN;TGA6;bZIP65 | Not available | Upstream | -284 |
| Matrix_457 | TGA2 | Not available | Upstream | -283 |
| Matrix_491 | AT1G68670;AT3G25790 | Not available | Upstream | -67 |
| Matrix_508 | APL;AT3G12730;AT3G24120;UNE16 | Not available | Upstream | -67 |
| Matrix_69 | AT2G03500 | Not available | Upstream | -67 |
| Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Upstream | -267 |
| Motif_244 | ABRE-like binding site motif | Not available | Upstream | -1318 |
| Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -1318 |
| Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Upstream | -1107 |
| Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -1319 |
| Motif_584 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Upstream | -626 |
| Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -1319 |
| Motif_638 | ABRE binding site motif | Not available | Upstream | -1318 |
| Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -1319 |
| Motif_685 | PALINDROMICCBOXGM | Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence | Upstream | -285 |
| Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -729 |
| | | Upstream | -797 |
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