View conserved binding sites


Gene
AT3G49220
Description
Plant invertase/pectin methylesterase inhibitor superfamily
Alias
Q9M3B0
Binding siteNameDescriptionLocationPosition
Matrix_242AT2G25820;AT3G16280;AT4G32800;TINY2;tnyNot availableDownstream4252
Matrix_385DEAR4Not availableDownstream4251
Matrix_394DREB_UNot availableDownstream4251
Downstream4320
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableDownstream4251
Downstream4320
Matrix_478AT1G01250Not availableDownstream4252
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableDownstream4252
Matrix_92AT1G33760Not availableDownstream4251
Motif_244ABRE-like binding site motifNot availableUpstream-300
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-300
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Downstream4322
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-660
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Downstream4322
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceDownstream4314
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Intron1091
Intron1092
Intron1093
Intron1094
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABADownstream4322
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-840