Matrix_104 | PI | Not available | Upstream | -432 |
| | | Upstream | -513 |
| | | Upstream | -514 |
| | | Upstream | -672 |
| | | Upstream | -673 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -476 |
Matrix_109 | GBF3 | Not available | Upstream | -432 |
Matrix_111 | ABF3 | Not available | Upstream | -515 |
| | | Upstream | -516 |
Matrix_113 | ABI5 | Not available | Upstream | -432 |
| | | Upstream | -515 |
| | | Upstream | -516 |
| | | Upstream | -575 |
| | | Upstream | -672 |
| | | Upstream | -673 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -473 |
| | | Upstream | -628 |
Matrix_120 | BEE2 | Not available | Upstream | -477 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -432 |
| | | Upstream | -513 |
| | | Upstream | -514 |
| | | Upstream | -631 |
| | | Upstream | -672 |
| | | Upstream | -673 |
Matrix_129 | ABF1 | Not available | Upstream | -433 |
| | | Upstream | -477 |
| | | Upstream | -576 |
| | | Upstream | -631 |
| | | Upstream | -673 |
| | | Upstream | -674 |
Matrix_133 | DYT1 | Not available | Upstream | -516 |
Matrix_134 | ABF1 | Not available | Upstream | -434 |
| | | Upstream | -515 |
| | | Upstream | -516 |
| | | Upstream | -576 |
| | | Upstream | -674 |
| | | Upstream | -675 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -477 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -433 |
| | | Upstream | -434 |
| | | Upstream | -478 |
| | | Upstream | -632 |
| | | Upstream | -674 |
| | | Upstream | -675 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -473 |
| | | Upstream | -572 |
Matrix_156 | POC1 | Not available | Upstream | -476 |
| | | Upstream | -478 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -477 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -474 |
| | | Upstream | -477 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -430 |
| | | Upstream | -516 |
| | | Upstream | -577 |
| | | Upstream | -670 |
| | | Upstream | -671 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -430 |
| | | Upstream | -573 |
| | | Upstream | -670 |
| | | Upstream | -671 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -477 |
Matrix_214 | AP1 | Not available | Upstream | -431 |
| | | Upstream | -513 |
| | | Upstream | -671 |
| | | Upstream | -672 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -430 |
| | | Upstream | -573 |
| | | Upstream | -674 |
| | | Upstream | -675 |
Matrix_233 | MYC3 | Not available | Upstream | -478 |
Matrix_24 | POC1 | Not available | Upstream | -473 |
| | | Upstream | -572 |
Matrix_247 | PIF3 | Not available | Upstream | -477 |
Matrix_25 | AP3 | Not available | Upstream | -340 |
| | | Upstream | -345 |
| | | Upstream | -648 |
Matrix_251 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -432 |
| | | Upstream | -672 |
| | | Upstream | -673 |
Matrix_264 | ATAREB1 | Not available | Upstream | -430 |
| | | Upstream | -631 |
| | | Upstream | -670 |
| | | Upstream | -671 |
Matrix_296 | GBF2 | Not available | Upstream | -477 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -433 |
| | | Upstream | -477 |
| | | Upstream | -673 |
| | | Upstream | -674 |
Matrix_301 | PIL5 | Not available | Upstream | -428 |
| | | Upstream | -571 |
| | | Upstream | -632 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -477 |
Matrix_331 | GBF1 | Not available | Upstream | -432 |
| | | Upstream | -672 |
| | | Upstream | -673 |
Matrix_332 | SPT;ALC | Not available | Upstream | -477 |
| | | Upstream | -478 |
Matrix_338 | AP2 | Not available | Upstream | -430 |
| | | Upstream | -573 |
| | | Upstream | -670 |
| | | Upstream | -671 |
Matrix_345 | POC1 | Not available | Upstream | -473 |
| | | Upstream | -628 |
Matrix_356 | PRR5 | Not available | Upstream | -430 |
| | | Upstream | -508 |
| | | Upstream | -569 |
| | | Upstream | -671 |
Matrix_359 | FLC | Not available | Upstream | -475 |
| | | Upstream | -513 |
| | | Upstream | -629 |
Matrix_403 | BZR1 | Not available | Upstream | -574 |
| | | Upstream | -629 |
| | | Upstream | -671 |
| | | Upstream | -672 |
Matrix_440 | LFY | Not available | Upstream | -768 |
Matrix_443 | AGL15 | Not available | Upstream | -431 |
| | | Upstream | -513 |
| | | Upstream | -574 |
| | | Upstream | -671 |
| | | Upstream | -672 |
Matrix_465 | MYC4 | Not available | Upstream | -477 |
Matrix_488 | ABF1 | Not available | Upstream | -623 |
Matrix_53 | MYC3 | Not available | Upstream | -475 |
Matrix_55 | PIF3 | Not available | Upstream | -432 |
| | | Upstream | -476 |
| | | Upstream | -672 |
| | | Upstream | -673 |
Matrix_64 | PIF5 | Not available | Upstream | -478 |
Matrix_7 | PIF4 | Not available | Upstream | -477 |
Matrix_77 | PRR5 | Not available | Upstream | -431 |
| | | Upstream | -476 |
| | | Upstream | -671 |
| | | Upstream | -672 |
Matrix_80 | BIM1 | Not available | Upstream | -432 |
| | | Upstream | -575 |
Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | Upstream | -643 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -434 |
| | | Upstream | -478 |
| | | Upstream | -516 |
| | | Upstream | -577 |
| | | Upstream | -632 |
| | | Upstream | -675 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -434 |
| | | Upstream | -516 |
| | | Upstream | -675 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -433 |
| | | Upstream | -434 |
| | | Upstream | -477 |
| | | Upstream | -478 |
| | | Upstream | -515 |
| | | Upstream | -516 |
| | | Upstream | -577 |
| | | Upstream | -631 |
| | | Upstream | -632 |
| | | Upstream | -674 |
| | | Upstream | -675 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -432 |
| | | Upstream | -434 |
| | | Upstream | -514 |
| | | Upstream | -516 |
| | | Upstream | -577 |
| | | Upstream | -673 |
| | | Upstream | -675 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -433 |
| | | Upstream | -515 |
| | | Upstream | -516 |
| | | Upstream | -674 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -434 |
| | | Upstream | -478 |
| | | Upstream | -516 |
| | | Upstream | -577 |
| | | Upstream | -632 |
| | | Upstream | -675 |
| | | Upstream | -1224 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -434 |
| | | Upstream | -477 |
| | | Upstream | -478 |
| | | Upstream | -631 |
| | | Upstream | -675 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -477 |
Motif_498 | SGBFGMGMAUX28 | bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoter | Upstream | -432 |
| | | Upstream | -673 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -432 |
| | | Upstream | -517 |
| | | Upstream | -578 |
| | | Upstream | -673 |
Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | Upstream | -293 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -432 |
| | | Upstream | -517 |
| | | Upstream | -578 |
| | | Upstream | -673 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -629 |