View conserved binding sites


Gene
AT3G17860
Description
jasmonate-zim-domain protein 3
Alias
jasmonate-zim-domain protein 3;Q9LVI4
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-404
Matrix_120BEE2Not availableUpstream-403
Matrix_122ABF1;AREB2Not availableUpstream-391
Matrix_134ABF1Not availableUpstream-391
Matrix_14ZCW32;AT5G62610Not availableUpstream-403
Upstream-402
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-407
Matrix_153AP2Not availableUpstream-404
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-403
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-403
Matrix_194HYH;HY5Not availableUpstream-394
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-403
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-394
Matrix_233MYC3Not availableUpstream-402
Matrix_24POC1Not availableUpstream-407
Matrix_264ATAREB1Not availableUpstream-403
Matrix_290AP2Not availableUpstream-1043
Matrix_301PIL5Not availableUpstream-402
Matrix_320MYC4Not availableUpstream-402
Matrix_323BIM3Not availableUpstream-403
Matrix_330MYC2;TT8Not availableUpstream-403
Matrix_332SPT;ALCNot availableUpstream-403
Upstream-402
Matrix_338AP2Not availableUpstream-394
Matrix_339bHLH104Not availableUpstream-403
Matrix_356PRR5Not availableUpstream-398
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-402
Matrix_369AT2G18300Not availableUpstream-405
Upstream-403
Matrix_389ILR3Not availableUpstream-403
Matrix_437MYC2Not availableUpstream-402
Matrix_443AGL15Not availableUpstream-393
Matrix_449BIM2Not availableUpstream-403
Matrix_465MYC4Not availableUpstream-403
Matrix_476bHLH115;bHLH34Not availableUpstream-402
Matrix_480BES1Not availableUpstream-404
Matrix_488ABF1Not availableUpstream-404
Upstream-399
Matrix_53MYC3Not availableUpstream-405
Upstream-401
Matrix_7PIF4Not availableUpstream-401
Matrix_77PRR5Not availableUpstream-404
Upstream-392
Matrix_79FUS3Not availableUpstream-207
Upstream-206
Matrix_80BIM1Not availableUpstream-404
Upstream-402
Matrix_90BEE1;BEE3;AT3G07340;AT5G48560;AT5G50915Not availableUpstream-402
Motif_134ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisUpstream-400
Upstream-399
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-402
Upstream-400
Upstream-354
Upstream-344
Motif_145MYCATERD1MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motifUpstream-213
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-255
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-401
Motif_190WUSATAgTarget sequence of WUS in the intron of AGAMOUS gene in ArabidopsisUpstream-227
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-401
Upstream-213
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-1403
Motif_210REBETALGLHCB21REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulationUpstream-321
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-402
Upstream-401
Upstream-389
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-309
Motif_256RHE_elementFunctional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution PatternsUpstream-428
Motif_261S1FBOXSORPS1L21S1F box conserved both in spinach RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activityUpstream-224
Motif_297Bellringer/replumless/pennywise BS1 IN AGRepression of AGAMOUS by BELLRINGER in Floral and Inflorescence MeristemsUpstream-452
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-388
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-401
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-233
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-329
Motif_447AtMYC2 BS in RD22;PIF4Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-213
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-329
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-403
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-404
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-329
Motif_642SEF1MOTIFSEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) geneUpstream-1195
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-329
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-264
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-264