View conserved binding sites


Gene
AT3G17040
Description
high chlorophyll fluorescent 107
Alias
HCF107
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-256
Matrix_109GBF3Not availableUpstream-207
Upstream-208
Matrix_113ABI5Not availableUpstream-256
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-205
Upstream-253
Matrix_122ABF1;AREB2Not availableUpstream-256
Matrix_129ABF1Not availableUpstream-257
Matrix_145GBF4;AT5G44080Not availableUpstream-258
Matrix_192FHY3/FAR1Not availableUpstream-254
Matrix_194HYH;HY5Not availableUpstream-254
Matrix_247PIF3Not availableUpstream-208
Upstream-209
Matrix_259AT1G50680;AT1G51120Not availableUpstream-208
Upstream-209
Matrix_264ATAREB1Not availableUpstream-254
Matrix_296GBF2Not availableUpstream-208
Upstream-209
Matrix_300bZIP68;bZIP16Not availableUpstream-208
Upstream-209
Upstream-257
Matrix_301PIL5Not availableUpstream-252
Matrix_331GBF1Not availableUpstream-207
Upstream-208
Upstream-256
Matrix_338AP2Not availableUpstream-254
Matrix_345POC1Not availableUpstream-205
Matrix_356PRR5Not availableUpstream-254
Matrix_443AGL15Not availableUpstream-255
Matrix_55PIF3Not availableUpstream-256
Matrix_77PRR5Not availableUpstream-255
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-222
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-1340
Upstream-1728
Motif_141BP5OSWXOsBP-5 (a MYC protein) binding site in Wx promoterUpstream-210
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-258
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-16
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-209
Upstream-257
Upstream-258
Upstream-1728
Upstream-1994
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-16
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACUpstream-740
Motif_244ABRE-like binding site motifNot availableUpstream-256
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-20
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-16
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-258
Motif_357NTBBF1ARROLBNtBBF1(Dof protein from tobacco) binding site in Agrobacterium rhizogenes rolB gene; Found in regulatory domain B (-341 to -306); Required for tissue-specific expression and auxin inductionUpstream-218
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-258
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-568
Upstream-1583
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-208
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-210
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-207
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-755
Upstream-756
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-208
Upstream-256
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-21
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-260
Motif_88MYB2ATBinding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in ArabidopsisUpstream-16