View conserved binding sites


Gene
AT3G16720
Description
TOXICOS EN LEVADURA 2
Alias
ATL2;Q8L9T5
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableDownstream1020
Matrix_109GBF3Not availableDownstream1020
Downstream1022
Matrix_113ABI5Not availableDownstream1020
Downstream1022
Matrix_122ABF1;AREB2Not availableDownstream1020
Downstream1021
Matrix_129ABF1Not availableDownstream1021
Matrix_134ABF1Not availableDownstream918
Downstream1022
Matrix_145GBF4;AT5G44080Not availableDownstream1022
Matrix_156POC1Not availableDownstream1022
Matrix_17WRKY22Not availableUpstream-181
Matrix_192FHY3/FAR1Not availableDownstream1018
Downstream1022
Matrix_194HYH;HY5Not availableDownstream1018
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableDownstream1021
Matrix_214AP1Not availableDownstream1019
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaDownstream1022
Matrix_247PIF3Not availableDownstream1021
Matrix_25AP3Not availableUpstream-196
Matrix_264ATAREB1Not availableDownstream1018
Downstream1021
Matrix_296GBF2Not availableDownstream1021
Matrix_300bZIP68;bZIP16Not availableDownstream1021
Downstream1022
Matrix_301PIL5Not availableDownstream1016
Matrix_331GBF1Not availableDownstream1020
Downstream1022
Matrix_332SPT;ALCNot availableDownstream1022
Matrix_338AP2Not availableDownstream1018
Matrix_356PRR5Not availableDownstream1014
Downstream1018
Matrix_389ILR3Not availableDownstream1021
Matrix_39AP1Not availableUpstream-219
Matrix_403BZR1Not availableDownstream916
Downstream1019
Matrix_438AtbZIP63Not availableDownstream1019
Matrix_443AGL15Not availableDownstream1019
Matrix_480BES1Not availableDownstream1021
Matrix_488ABF1Not availableDownstream1013
Downstream1020
Matrix_53MYC3Not availableDownstream1023
Matrix_55PIF3Not availableDownstream1020
Matrix_7PIF4Not availableDownstream1023
Matrix_75WRKY29Not availableUpstream-181
Matrix_77PRR5Not availableDownstream1019
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-22
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesDownstream1023
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream1023
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREDownstream1023
Motif_244ABRE-like binding site motifNot availableDownstream1023
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightUpstream-205
Motif_274MYB1 binding site motifIsolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoproteinUpstream-16
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementDownstream1023
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-14
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-182
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureDownstream1023
Motif_348WBBOXPCWRKY1WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in ArabidopsisUpstream-200
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyDownstream1023
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationDownstream1024
Motif_626ACGTTBOXT-box according to the nomenclature of ACGT elements; One of ACGT elements; See also ACGTABOX,ACGTCBOX, and CACGTGMOTIFUpstream-175
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisDownstream1024
Motif_638ABRE binding site motifNot availableDownstream1023
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-22