Matrix_104 | PI | Not available | Downstream | 1020 |
Matrix_109 | GBF3 | Not available | Downstream | 1020 |
| | | Downstream | 1022 |
Matrix_113 | ABI5 | Not available | Downstream | 1020 |
| | | Downstream | 1022 |
Matrix_122 | ABF1;AREB2 | Not available | Downstream | 1020 |
| | | Downstream | 1021 |
Matrix_129 | ABF1 | Not available | Downstream | 1021 |
Matrix_134 | ABF1 | Not available | Downstream | 918 |
| | | Downstream | 1022 |
Matrix_145 | GBF4;AT5G44080 | Not available | Downstream | 1022 |
Matrix_156 | POC1 | Not available | Downstream | 1022 |
Matrix_17 | WRKY22 | Not available | Upstream | -181 |
Matrix_192 | FHY3/FAR1 | Not available | Downstream | 1018 |
| | | Downstream | 1022 |
Matrix_194 | HYH;HY5 | Not available | Downstream | 1018 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Downstream | 1021 |
Matrix_214 | AP1 | Not available | Downstream | 1019 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Downstream | 1022 |
Matrix_247 | PIF3 | Not available | Downstream | 1021 |
Matrix_25 | AP3 | Not available | Upstream | -196 |
Matrix_264 | ATAREB1 | Not available | Downstream | 1018 |
| | | Downstream | 1021 |
Matrix_296 | GBF2 | Not available | Downstream | 1021 |
Matrix_300 | bZIP68;bZIP16 | Not available | Downstream | 1021 |
| | | Downstream | 1022 |
Matrix_301 | PIL5 | Not available | Downstream | 1016 |
Matrix_331 | GBF1 | Not available | Downstream | 1020 |
| | | Downstream | 1022 |
Matrix_332 | SPT;ALC | Not available | Downstream | 1022 |
Matrix_338 | AP2 | Not available | Downstream | 1018 |
Matrix_356 | PRR5 | Not available | Downstream | 1014 |
| | | Downstream | 1018 |
Matrix_389 | ILR3 | Not available | Downstream | 1021 |
Matrix_39 | AP1 | Not available | Upstream | -219 |
Matrix_403 | BZR1 | Not available | Downstream | 916 |
| | | Downstream | 1019 |
Matrix_438 | AtbZIP63 | Not available | Downstream | 1019 |
Matrix_443 | AGL15 | Not available | Downstream | 1019 |
Matrix_480 | BES1 | Not available | Downstream | 1021 |
Matrix_488 | ABF1 | Not available | Downstream | 1013 |
| | | Downstream | 1020 |
Matrix_53 | MYC3 | Not available | Downstream | 1023 |
Matrix_55 | PIF3 | Not available | Downstream | 1020 |
Matrix_7 | PIF4 | Not available | Downstream | 1023 |
Matrix_75 | WRKY29 | Not available | Upstream | -181 |
Matrix_77 | PRR5 | Not available | Downstream | 1019 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -22 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Downstream | 1023 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Downstream | 1023 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Downstream | 1023 |
Motif_244 | ABRE-like binding site motif | Not available | Downstream | 1023 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Upstream | -205 |
Motif_274 | MYB1 binding site motif | Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein | Upstream | -16 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Downstream | 1023 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -14 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -182 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Downstream | 1023 |
Motif_348 | WBBOXPCWRKY1 | WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in Arabidopsis | Upstream | -200 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Downstream | 1023 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Downstream | 1024 |
Motif_626 | ACGTTBOX | T-box according to the nomenclature of ACGT elements; One of ACGT elements; See also ACGTABOX,ACGTCBOX, and CACGTGMOTIF | Upstream | -175 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Downstream | 1024 |
Motif_638 | ABRE binding site motif | Not available | Downstream | 1023 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -22 |