Matrix_101 | ERF5 | Not available | Upstream | -41 |
| | | Upstream | -38 |
| | | Upstream | -35 |
| | | Upstream | -32 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -42 |
| | | Upstream | -39 |
| | | Upstream | -36 |
| | | Upstream | -33 |
Matrix_119 | RRTF1 | Not available | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_138 | RRTF1 | Not available | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_146 | ORA47 | Not available | Upstream | -41 |
| | | Upstream | -38 |
| | | Upstream | -35 |
| | | Upstream | -32 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -39 |
| | | Upstream | -36 |
| | | Upstream | -33 |
| | | Upstream | -30 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_190 | ATERF1 | Not available | Upstream | -42 |
| | | Upstream | -41 |
| | | Upstream | -39 |
| | | Upstream | -38 |
| | | Upstream | -36 |
| | | Upstream | -35 |
| | | Upstream | -33 |
| | | Upstream | -32 |
Matrix_224 | ERF1 | Not available | Upstream | -43 |
| | | Upstream | -40 |
| | | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_234 | RAP2.3 | Not available | Upstream | -41 |
| | | Upstream | -38 |
| | | Upstream | -35 |
| | | Upstream | -32 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_252 | RAP2.6 | Not available | Upstream | -42 |
| | | Upstream | -41 |
| | | Upstream | -39 |
| | | Upstream | -38 |
| | | Upstream | -36 |
| | | Upstream | -35 |
| | | Upstream | -33 |
| | | Upstream | -32 |
Matrix_261 | ATERF-1 | Not available | Upstream | -40 |
| | | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -157 |
Matrix_272 | DEAR4 | Not available | Upstream | -41 |
| | | Upstream | -38 |
| | | Upstream | -35 |
| | | Upstream | -32 |
Matrix_287 | ERF2 | Not available | Upstream | -41 |
| | | Upstream | -38 |
| | | Upstream | -35 |
| | | Upstream | -32 |
Matrix_288 | RAP2.3 | Not available | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_295 | ERF1 | Not available | Upstream | -39 |
| | | Upstream | -36 |
| | | Upstream | -33 |
| | | Upstream | -30 |
Matrix_321 | HRD | Not available | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -40 |
| | | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_334 | AT3G23230 | Not available | Upstream | -40 |
| | | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_343 | AT2G33710 | Not available | Upstream | -41 |
| | | Upstream | -38 |
| | | Upstream | -35 |
| | | Upstream | -32 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -39 |
| | | Upstream | -36 |
| | | Upstream | -33 |
| | | Upstream | -30 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -40 |
| | | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_360 | ORA59 | Not available | Upstream | -39 |
| | | Upstream | -36 |
| | | Upstream | -33 |
| | | Upstream | -30 |
Matrix_363 | RAP2.3 | Not available | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -40 |
| | | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -40 |
| | | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_378 | ATERF1 | Not available | Upstream | -41 |
| | | Upstream | -38 |
| | | Upstream | -35 |
| | | Upstream | -32 |
Matrix_405 | DREB2C | Not available | Upstream | -39 |
| | | Upstream | -36 |
| | | Upstream | -33 |
Matrix_406 | ATERF-7 | Not available | Upstream | -39 |
| | | Upstream | -36 |
| | | Upstream | -33 |
Matrix_409 | DEAR3 | Not available | Upstream | -40 |
| | | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -40 |
| | | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_448 | ATERF6 | Not available | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_45 | DRN | Not available | Upstream | -39 |
| | | Upstream | -36 |
| | | Upstream | -33 |
| | | Upstream | -30 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_462 | ATERF-8 | Not available | Upstream | -39 |
| | | Upstream | -36 |
| | | Upstream | -33 |
Matrix_473 | RRTF1 | Not available | Upstream | -41 |
| | | Upstream | -38 |
| | | Upstream | -35 |
| | | Upstream | -32 |
Matrix_48 | PI | Not available | Upstream | -332 |
Matrix_484 | ATERF13 | Not available | Upstream | -39 |
| | | Upstream | -36 |
| | | Upstream | -33 |
| | | Upstream | -30 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -40 |
| | | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -40 |
| | | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -40 |
| | | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_517 | ERF12 | Not available | Upstream | -42 |
| | | Upstream | -39 |
| | | Upstream | -36 |
| | | Upstream | -33 |
| | | Upstream | -30 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -40 |
| | | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -40 |
| | | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Matrix_91 | CRF3 | Not available | Upstream | -40 |
| | | Upstream | -37 |
| | | Upstream | -34 |
| | | Upstream | -31 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Downstream | 1566 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Downstream | 1566 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -38 |
| | | Upstream | -35 |
| | | Upstream | -32 |
| | | Upstream | -29 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Downstream | 1566 |
Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | Upstream | -43 |
Motif_630 | WBOXNTCHN48 | W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco | Upstream | -976 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 1838 |
| | | Downstream | 1839 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -319 |
| | | Upstream | -233 |
Motif_88 | MYB2AT | Binding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis | Downstream | 1566 |