View conserved binding sites


Gene
AT3G15030
Description
TCP family transcription factor 4
Alias
MEE35;Q8LPR5
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-41
Upstream-38
Upstream-35
Upstream-32
Matrix_110ATABI4;AT3G57600Not availableUpstream-42
Upstream-39
Upstream-36
Upstream-33
Matrix_119RRTF1Not availableUpstream-37
Upstream-34
Upstream-31
Matrix_138RRTF1Not availableUpstream-37
Upstream-34
Upstream-31
Matrix_146ORA47Not availableUpstream-41
Upstream-38
Upstream-35
Upstream-32
Matrix_147ERF3;AT1G80580Not availableUpstream-39
Upstream-36
Upstream-33
Upstream-30
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-37
Upstream-34
Upstream-31
Matrix_190ATERF1Not availableUpstream-42
Upstream-41
Upstream-39
Upstream-38
Upstream-36
Upstream-35
Upstream-33
Upstream-32
Matrix_224ERF1Not availableUpstream-43
Upstream-40
Upstream-37
Upstream-34
Upstream-31
Matrix_234RAP2.3Not availableUpstream-41
Upstream-38
Upstream-35
Upstream-32
Matrix_243RAP2.12;RAP2.2Not availableUpstream-37
Upstream-34
Upstream-31
Matrix_252RAP2.6Not availableUpstream-42
Upstream-41
Upstream-39
Upstream-38
Upstream-36
Upstream-35
Upstream-33
Upstream-32
Matrix_261ATERF-1Not availableUpstream-40
Upstream-37
Upstream-34
Upstream-31
Matrix_269FHY3/FAR1Not availableUpstream-157
Matrix_272DEAR4Not availableUpstream-41
Upstream-38
Upstream-35
Upstream-32
Matrix_287ERF2Not availableUpstream-41
Upstream-38
Upstream-35
Upstream-32
Matrix_288RAP2.3Not availableUpstream-37
Upstream-34
Upstream-31
Matrix_295ERF1Not availableUpstream-39
Upstream-36
Upstream-33
Upstream-30
Matrix_321HRDNot availableUpstream-37
Upstream-34
Upstream-31
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-40
Upstream-37
Upstream-34
Upstream-31
Matrix_334AT3G23230Not availableUpstream-40
Upstream-37
Upstream-34
Upstream-31
Matrix_343AT2G33710Not availableUpstream-41
Upstream-38
Upstream-35
Upstream-32
Matrix_344ATERF15;AT4G18450Not availableUpstream-39
Upstream-36
Upstream-33
Upstream-30
Matrix_355ERF10;ERF11Not availableUpstream-40
Upstream-37
Upstream-34
Upstream-31
Matrix_360ORA59Not availableUpstream-39
Upstream-36
Upstream-33
Upstream-30
Matrix_363RAP2.3Not availableUpstream-37
Upstream-34
Upstream-31
Matrix_374AT5G07580;AT5G61590Not availableUpstream-40
Upstream-37
Upstream-34
Upstream-31
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-40
Upstream-37
Upstream-34
Upstream-31
Matrix_378ATERF1Not availableUpstream-41
Upstream-38
Upstream-35
Upstream-32
Matrix_405DREB2CNot availableUpstream-39
Upstream-36
Upstream-33
Matrix_406ATERF-7Not availableUpstream-39
Upstream-36
Upstream-33
Matrix_409DEAR3Not availableUpstream-40
Upstream-37
Upstream-34
Upstream-31
Matrix_426CRF1;CRF2Not availableUpstream-40
Upstream-37
Upstream-34
Upstream-31
Matrix_448ATERF6Not availableUpstream-37
Upstream-34
Upstream-31
Matrix_45DRNNot availableUpstream-39
Upstream-36
Upstream-33
Upstream-30
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-37
Upstream-34
Upstream-31
Matrix_462ATERF-8Not availableUpstream-39
Upstream-36
Upstream-33
Matrix_473RRTF1Not availableUpstream-41
Upstream-38
Upstream-35
Upstream-32
Matrix_48PINot availableUpstream-332
Matrix_484ATERF13Not availableUpstream-39
Upstream-36
Upstream-33
Upstream-30
Matrix_493AT1G22985;AT1G71130Not availableUpstream-40
Upstream-37
Upstream-34
Upstream-31
Matrix_50ATERF14;AT5G43410Not availableUpstream-40
Upstream-37
Upstream-34
Upstream-31
Matrix_506DRNL;ATERF-4Not availableUpstream-40
Upstream-37
Upstream-34
Upstream-31
Matrix_517ERF12Not availableUpstream-42
Upstream-39
Upstream-36
Upstream-33
Upstream-30
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-40
Upstream-37
Upstream-34
Upstream-31
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-40
Upstream-37
Upstream-34
Upstream-31
Matrix_91CRF3Not availableUpstream-40
Upstream-37
Upstream-34
Upstream-31
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Downstream1566
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisDownstream1566
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-38
Upstream-35
Upstream-32
Upstream-29
Motif_336MYBMOUSEBinding site for mouse c-myb proteinDownstream1566
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-43
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-976
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream1838
Downstream1839
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-319
Upstream-233
Motif_88MYB2ATBinding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in ArabidopsisDownstream1566