View conserved binding sites


Gene
AT3G14440
Description
nine-cis-epoxycarotenoid dioxygenase 3
Alias
Q9LRR7;STO1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-198
Upstream-199
Matrix_109GBF3Not availableUpstream-198
Matrix_113ABI5Not availableUpstream-198
Upstream-199
Matrix_122ABF1;AREB2Not availableUpstream-198
Upstream-199
Upstream-200
Matrix_129ABF1Not availableUpstream-199
Upstream-200
Matrix_134ABF1Not availableUpstream-199
Upstream-200
Matrix_145GBF4;AT5G44080Not availableUpstream-200
Upstream-201
Matrix_156POC1Not availableUpstream-198
Upstream-199
Matrix_174ZAT2Not availableDownstream2082
Matrix_192FHY3/FAR1Not availableUpstream-196
Upstream-197
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-196
Upstream-197
Matrix_24POC1Not availableUpstream-195
Matrix_264ATAREB1Not availableUpstream-196
Upstream-197
Upstream-199
Upstream-200
Matrix_279HRS1Not availableDownstream1913
Matrix_300bZIP68;bZIP16Not availableUpstream-199
Upstream-200
Matrix_301PIL5Not availableUpstream-194
Upstream-195
Matrix_331GBF1Not availableUpstream-198
Matrix_332SPT;ALCNot availableUpstream-199
Upstream-200
Matrix_338AP2Not availableUpstream-196
Upstream-197
Matrix_361AT1G25550Not availableDownstream1914
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusDownstream1942
Matrix_403BZR1Not availableUpstream-197
Upstream-198
Matrix_414AGL15Not availableUpstream-88
Upstream-92
Upstream-93
Upstream-97
Upstream-98
Upstream-99
Upstream-100
Matrix_443AGL15Not availableUpstream-197
Upstream-198
Matrix_446LBD16Not availableDownstream1910
Matrix_48PINot availableUpstream-220
Matrix_480BES1Not availableUpstream-198
Upstream-199
Matrix_488ABF1Not availableUpstream-192
Matrix_491AT1G68670;AT3G25790Not availableDownstream1914
Matrix_502AT3G13040Not availableDownstream1915
Matrix_508APL;AT3G12730;AT3G24120;UNE16Not availableDownstream1914
Matrix_53MYC3Not availableUpstream-197
Upstream-198
Matrix_55PIF3Not availableUpstream-198
Upstream-199
Matrix_69AT2G03500Not availableDownstream1914
Matrix_7PIF4Not availableUpstream-199
Upstream-200
Matrix_77PRR5Not availableUpstream-198
Upstream-199
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceUpstream-113
Motif_131P1BSPHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtiiDownstream1900
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Downstream1908
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-201
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream2080
Upstream-201
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-199
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-200
Upstream-201
Upstream-1390
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisDownstream2090
Motif_235C8GCARGATBinding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)Downstream1994
Motif_244ABRE-like binding site motifNot availableUpstream-199
Upstream-1721
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-201
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-114
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightDownstream2094
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-199
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-201
Motif_351GARE1OSREP1Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in riceDownstream2090
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-116
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-200
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Downstream1878
Motif_520AMYBOX1amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barleyDownstream2090
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-199
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneDownstream1906
Upstream-198
Upstream-1391
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceDownstream2049
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Downstream1935
Downstream1934
Downstream1933
Downstream1932
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisDownstream2084
Upstream-117
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-199
Motif_638ABRE binding site motifNot availableUpstream-199
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream1879