Matrix_104 | PI | Not available | Upstream | -198 |
| | | Upstream | -199 |
Matrix_109 | GBF3 | Not available | Upstream | -198 |
Matrix_113 | ABI5 | Not available | Upstream | -198 |
| | | Upstream | -199 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -198 |
| | | Upstream | -199 |
| | | Upstream | -200 |
Matrix_129 | ABF1 | Not available | Upstream | -199 |
| | | Upstream | -200 |
Matrix_134 | ABF1 | Not available | Upstream | -199 |
| | | Upstream | -200 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -200 |
| | | Upstream | -201 |
Matrix_156 | POC1 | Not available | Upstream | -198 |
| | | Upstream | -199 |
Matrix_174 | ZAT2 | Not available | Downstream | 2082 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -196 |
| | | Upstream | -197 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -196 |
| | | Upstream | -197 |
Matrix_24 | POC1 | Not available | Upstream | -195 |
Matrix_264 | ATAREB1 | Not available | Upstream | -196 |
| | | Upstream | -197 |
| | | Upstream | -199 |
| | | Upstream | -200 |
Matrix_279 | HRS1 | Not available | Downstream | 1913 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -199 |
| | | Upstream | -200 |
Matrix_301 | PIL5 | Not available | Upstream | -194 |
| | | Upstream | -195 |
Matrix_331 | GBF1 | Not available | Upstream | -198 |
Matrix_332 | SPT;ALC | Not available | Upstream | -199 |
| | | Upstream | -200 |
Matrix_338 | AP2 | Not available | Upstream | -196 |
| | | Upstream | -197 |
Matrix_361 | AT1G25550 | Not available | Downstream | 1914 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Downstream | 1942 |
Matrix_403 | BZR1 | Not available | Upstream | -197 |
| | | Upstream | -198 |
Matrix_414 | AGL15 | Not available | Upstream | -88 |
| | | Upstream | -92 |
| | | Upstream | -93 |
| | | Upstream | -97 |
| | | Upstream | -98 |
| | | Upstream | -99 |
| | | Upstream | -100 |
Matrix_443 | AGL15 | Not available | Upstream | -197 |
| | | Upstream | -198 |
Matrix_446 | LBD16 | Not available | Downstream | 1910 |
Matrix_48 | PI | Not available | Upstream | -220 |
Matrix_480 | BES1 | Not available | Upstream | -198 |
| | | Upstream | -199 |
Matrix_488 | ABF1 | Not available | Upstream | -192 |
Matrix_491 | AT1G68670;AT3G25790 | Not available | Downstream | 1914 |
Matrix_502 | AT3G13040 | Not available | Downstream | 1915 |
Matrix_508 | APL;AT3G12730;AT3G24120;UNE16 | Not available | Downstream | 1914 |
Matrix_53 | MYC3 | Not available | Upstream | -197 |
| | | Upstream | -198 |
Matrix_55 | PIF3 | Not available | Upstream | -198 |
| | | Upstream | -199 |
Matrix_69 | AT2G03500 | Not available | Downstream | 1914 |
Matrix_7 | PIF4 | Not available | Upstream | -199 |
| | | Upstream | -200 |
Matrix_77 | PRR5 | Not available | Upstream | -198 |
| | | Upstream | -199 |
Motif_104 | CAREOSREP1 | CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in rice | Upstream | -113 |
Motif_131 | P1BS | PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii | Downstream | 1900 |
Motif_171 | TCP binding consensus | found enriched in peaks in chip-seq data for SEP3 | Downstream | 1908 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -201 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Downstream | 2080 |
| | | Upstream | -201 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -199 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -200 |
| | | Upstream | -201 |
| | | Upstream | -1390 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Downstream | 2090 |
Motif_235 | C8GCARGAT | Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15) | Downstream | 1994 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -199 |
| | | Upstream | -1721 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -201 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -114 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Downstream | 2094 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -199 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -201 |
Motif_351 | GARE1OSREP1 | Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in rice | Downstream | 2090 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -116 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -200 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Downstream | 1878 |
Motif_520 | AMYBOX1 | amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barley | Downstream | 2090 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -199 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Downstream | 1906 |
| | | Upstream | -198 |
| | | Upstream | -1391 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Downstream | 2049 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Downstream | 1935 |
| | | Downstream | 1934 |
| | | Downstream | 1933 |
| | | Downstream | 1932 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Downstream | 2084 |
| | | Upstream | -117 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -199 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -199 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 1879 |