View conserved binding sites


Gene
AT3G12670
Description
CTP synthase family protein
Alias
embryo defective 2742
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-201
Matrix_115AGL15Not availableUpstream-17
Upstream-714
Matrix_119RRTF1Not availableUpstream-200
Matrix_138RRTF1Not availableUpstream-200
Matrix_146ORA47Not availableUpstream-201
Matrix_147ERF3;AT1G80580Not availableUpstream-201
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-202
Matrix_190ATERF1Not availableUpstream-201
Upstream-202
Matrix_224ERF1Not availableUpstream-200
Upstream-202
Upstream-203
Matrix_234RAP2.3Not availableUpstream-201
Matrix_243RAP2.12;RAP2.2Not availableUpstream-202
Matrix_252RAP2.6Not availableUpstream-201
Matrix_261ATERF-1Not availableUpstream-201
Matrix_272DEAR4Not availableUpstream-201
Matrix_287ERF2Not availableUpstream-201
Matrix_288RAP2.3Not availableUpstream-200
Matrix_295ERF1Not availableUpstream-201
Upstream-203
Upstream-204
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-200
Matrix_334AT3G23230Not availableUpstream-202
Matrix_343AT2G33710Not availableUpstream-201
Matrix_355ERF10;ERF11Not availableUpstream-200
Matrix_360ORA59Not availableUpstream-201
Upstream-203
Upstream-204
Matrix_363RAP2.3Not availableUpstream-200
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-201
Matrix_378ATERF1Not availableUpstream-201
Matrix_406ATERF-7Not availableUpstream-199
Upstream-202
Matrix_409DEAR3Not availableUpstream-200
Matrix_414AGL15Not availableUpstream-977
Matrix_426CRF1;CRF2Not availableUpstream-202
Matrix_45DRNNot availableUpstream-201
Upstream-203
Matrix_462ATERF-8Not availableUpstream-199
Upstream-202
Matrix_473RRTF1Not availableUpstream-201
Matrix_484ATERF13Not availableUpstream-201
Upstream-203
Upstream-204
Matrix_493AT1G22985;AT1G71130Not availableUpstream-201
Matrix_50ATERF14;AT5G43410Not availableUpstream-200
Upstream-202
Upstream-203
Matrix_506DRNL;ATERF-4Not availableUpstream-202
Matrix_517ERF12Not availableUpstream-201
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-200
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-202
Matrix_91CRF3Not availableUpstream-201
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-422
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-201
Upstream-204
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-204
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-10
Upstream-653
Upstream-661
Motif_375ERELEE4ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter regionUpstream-369
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-274
Upstream-340