View conserved binding sites


Gene
AT3G07250
Description
nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein
Alias
Not available
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-347
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-615
Matrix_109GBF3Not availableUpstream-346
Upstream-347
Matrix_111ABF3Not availableUpstream-379
Matrix_113ABI5Not availableUpstream-346
Upstream-347
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-345
Matrix_120BEE2Not availableUpstream-616
Matrix_122ABF1;AREB2Not availableUpstream-348
Upstream-414
Matrix_129ABF1Not availableUpstream-348
Matrix_133DYT1Not availableUpstream-352
Matrix_134ABF1Not availableUpstream-347
Upstream-348
Matrix_14ZCW32;AT5G62610Not availableUpstream-616
Matrix_145GBF4;AT5G44080Not availableUpstream-348
Upstream-349
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-344
Upstream-411
Matrix_156POC1Not availableUpstream-346
Upstream-347
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-616
Matrix_176MYB98Not availableUpstream-556
Matrix_192FHY3/FAR1Not availableUpstream-344
Upstream-345
Matrix_194HYH;HY5Not availableUpstream-345
Upstream-488
Upstream-665
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-616
Matrix_208AP1Not availableIntron1053
Matrix_214AP1Not availableUpstream-346
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-344
Upstream-345
Upstream-492
Matrix_233MYC3Not availableUpstream-617
Matrix_24POC1Not availableUpstream-344
Upstream-411
Upstream-487
Matrix_264ATAREB1Not availableUpstream-345
Upstream-348
Matrix_300bZIP68;bZIP16Not availableUpstream-347
Upstream-348
Matrix_301PIL5Not availableUpstream-343
Matrix_317AT1G06070;AT2G31370;AT2G40620Not availableUpstream-397
Matrix_323BIM3Not availableUpstream-616
Matrix_330MYC2;TT8Not availableUpstream-616
Matrix_331GBF1Not availableUpstream-346
Upstream-347
Matrix_332SPT;ALCNot availableUpstream-347
Upstream-348
Upstream-616
Matrix_338AP2Not availableUpstream-164
Upstream-345
Upstream-488
Matrix_339bHLH104Not availableUpstream-616
Matrix_345POC1Not availableUpstream-345
Matrix_356PRR5Not availableUpstream-341
Matrix_369AT2G18300Not availableUpstream-614
Upstream-616
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-271
Matrix_380ATMYR1Not availableUpstream-456
Matrix_389ILR3Not availableUpstream-616
Matrix_403BZR1Not availableUpstream-346
Matrix_443AGL15Not availableUpstream-346
Matrix_449BIM2Not availableUpstream-616
Matrix_465MYC4Not availableUpstream-616
Matrix_480BES1Not availableUpstream-347
Upstream-615
Matrix_488ABF1Not availableUpstream-340
Upstream-483
Matrix_53MYC3Not availableUpstream-345
Upstream-346
Upstream-614
Matrix_55PIF3Not availableUpstream-347
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-584
Matrix_60AT1G01260;AT5G57150Not availableUpstream-358
Matrix_7PIF4Not availableUpstream-347
Upstream-348
Upstream-616
Matrix_80BIM1Not availableUpstream-615
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-359
Upstream-616
Upstream-618
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Upstream-480
Upstream-481
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-349
Upstream-358
Upstream-379
Upstream-617
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-349
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-347
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-348
Upstream-349
Upstream-357
Upstream-358
Upstream-378
Upstream-379
Upstream-415
Upstream-616
Upstream-617
Motif_244ABRE-like binding site motifNot availableUpstream-347
Upstream-349
Upstream-379
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-349
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-347
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-349
Upstream-358
Upstream-379
Upstream-586
Upstream-617
Motif_349QARBNEXTAQAR (quantitative activator region) in promoter region of Brassica napus extA extensin geneUpstream-415
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-348
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-347
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-416
Upstream-1113
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-614
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-347
Upstream-414
Motif_638ABRE binding site motifNot availableUpstream-347
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-414
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-346