Matrix_104 | PI | Not available | Upstream | -347 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -615 |
Matrix_109 | GBF3 | Not available | Upstream | -346 |
| | | Upstream | -347 |
Matrix_111 | ABF3 | Not available | Upstream | -379 |
Matrix_113 | ABI5 | Not available | Upstream | -346 |
| | | Upstream | -347 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -345 |
Matrix_120 | BEE2 | Not available | Upstream | -616 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -348 |
| | | Upstream | -414 |
Matrix_129 | ABF1 | Not available | Upstream | -348 |
Matrix_133 | DYT1 | Not available | Upstream | -352 |
Matrix_134 | ABF1 | Not available | Upstream | -347 |
| | | Upstream | -348 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -616 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -348 |
| | | Upstream | -349 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -344 |
| | | Upstream | -411 |
Matrix_156 | POC1 | Not available | Upstream | -346 |
| | | Upstream | -347 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -616 |
Matrix_176 | MYB98 | Not available | Upstream | -556 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -344 |
| | | Upstream | -345 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -345 |
| | | Upstream | -488 |
| | | Upstream | -665 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -616 |
Matrix_208 | AP1 | Not available | Intron | 1053 |
Matrix_214 | AP1 | Not available | Upstream | -346 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -344 |
| | | Upstream | -345 |
| | | Upstream | -492 |
Matrix_233 | MYC3 | Not available | Upstream | -617 |
Matrix_24 | POC1 | Not available | Upstream | -344 |
| | | Upstream | -411 |
| | | Upstream | -487 |
Matrix_264 | ATAREB1 | Not available | Upstream | -345 |
| | | Upstream | -348 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -347 |
| | | Upstream | -348 |
Matrix_301 | PIL5 | Not available | Upstream | -343 |
Matrix_317 | AT1G06070;AT2G31370;AT2G40620 | Not available | Upstream | -397 |
Matrix_323 | BIM3 | Not available | Upstream | -616 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -616 |
Matrix_331 | GBF1 | Not available | Upstream | -346 |
| | | Upstream | -347 |
Matrix_332 | SPT;ALC | Not available | Upstream | -347 |
| | | Upstream | -348 |
| | | Upstream | -616 |
Matrix_338 | AP2 | Not available | Upstream | -164 |
| | | Upstream | -345 |
| | | Upstream | -488 |
Matrix_339 | bHLH104 | Not available | Upstream | -616 |
Matrix_345 | POC1 | Not available | Upstream | -345 |
Matrix_356 | PRR5 | Not available | Upstream | -341 |
Matrix_369 | AT2G18300 | Not available | Upstream | -614 |
| | | Upstream | -616 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Upstream | -271 |
Matrix_380 | ATMYR1 | Not available | Upstream | -456 |
Matrix_389 | ILR3 | Not available | Upstream | -616 |
Matrix_403 | BZR1 | Not available | Upstream | -346 |
Matrix_443 | AGL15 | Not available | Upstream | -346 |
Matrix_449 | BIM2 | Not available | Upstream | -616 |
Matrix_465 | MYC4 | Not available | Upstream | -616 |
Matrix_480 | BES1 | Not available | Upstream | -347 |
| | | Upstream | -615 |
Matrix_488 | ABF1 | Not available | Upstream | -340 |
| | | Upstream | -483 |
Matrix_53 | MYC3 | Not available | Upstream | -345 |
| | | Upstream | -346 |
| | | Upstream | -614 |
Matrix_55 | PIF3 | Not available | Upstream | -347 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -584 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -358 |
Matrix_7 | PIF4 | Not available | Upstream | -347 |
| | | Upstream | -348 |
| | | Upstream | -616 |
Matrix_80 | BIM1 | Not available | Upstream | -615 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -359 |
| | | Upstream | -616 |
| | | Upstream | -618 |
Motif_171 | TCP binding consensus | found enriched in peaks in chip-seq data for SEP3 | Upstream | -480 |
| | | Upstream | -481 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -349 |
| | | Upstream | -358 |
| | | Upstream | -379 |
| | | Upstream | -617 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -349 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -347 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -348 |
| | | Upstream | -349 |
| | | Upstream | -357 |
| | | Upstream | -358 |
| | | Upstream | -378 |
| | | Upstream | -379 |
| | | Upstream | -415 |
| | | Upstream | -616 |
| | | Upstream | -617 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -347 |
| | | Upstream | -349 |
| | | Upstream | -379 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -349 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -347 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -349 |
| | | Upstream | -358 |
| | | Upstream | -379 |
| | | Upstream | -586 |
| | | Upstream | -617 |
Motif_349 | QARBNEXTA | QAR (quantitative activator region) in promoter region of Brassica napus extA extensin gene | Upstream | -415 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -348 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -347 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -416 |
| | | Upstream | -1113 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -614 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -347 |
| | | Upstream | -414 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -347 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -414 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -346 |