Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -701 |
Matrix_109 | GBF3 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_113 | ABI5 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_127 | AtMYB15 | More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -556 |
Matrix_133 | DYT1 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_134 | ABF1 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_150 | UNE10;PIF7 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_153 | AP2 | Not available | Upstream | -701 |
Matrix_156 | POC1 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -702 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -702 |
| | | Upstream | -703 |
Matrix_226 | GATA1 | Not available | Upstream | -439 |
Matrix_24 | POC1 | Not available | Upstream | -698 |
Matrix_264 | ATAREB1 | Not available | Upstream | -702 |
Matrix_296 | GBF2 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_301 | PIL5 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_315 | MYB111 | Not available | Upstream | -559 |
Matrix_331 | GBF1 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_332 | SPT;ALC | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_345 | POC1 | Not available | Upstream | -699 |
Matrix_441 | ATHB5 | Not available | Intron | 2311 |
Matrix_488 | ABF1 | Not available | Upstream | -701 |
Matrix_505 | GATA8 | Not available | Upstream | -439 |
| | | Upstream | -741 |
Matrix_53 | MYC3 | Not available | Upstream | -703 |
| | | Upstream | -704 |
Matrix_55 | PIF3 | Not available | Upstream | -701 |
Matrix_63 | ARR10 | Not available | Upstream | -741 |
Matrix_64 | PIF5 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_7 | PIF4 | Not available | Upstream | -703 |
| | | Upstream | -704 |
Matrix_80 | BIM1 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -1149 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -702 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -703 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -703 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -703 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -703 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -559 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -1118 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -703 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -1117 |
| | | Upstream | -1139 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -703 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -1138 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -1141 |
Motif_419 | MYB4 binding site motif | Not available | Upstream | -715 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -703 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Upstream | -559 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -704 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -704 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -704 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -703 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -559 |
Motif_667 | TATABOXOSPAL | Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter | Upstream | -1115 |