View conserved binding sites


Gene
AT3G02380
Description
CONSTANS-like 2
Alias
CONSTANS-LIKE 2;Q96502
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-139
Matrix_109GBF3Not availableUpstream-141
Matrix_113ABI5Not availableUpstream-141
Matrix_122ABF1;AREB2Not availableUpstream-139
Matrix_129ABF1Not availableUpstream-140
Matrix_134ABF1Not availableUpstream-141
Matrix_145GBF4;AT5G44080Not availableUpstream-141
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-136
Matrix_156POC1Not availableUpstream-141
Matrix_192FHY3/FAR1Not availableUpstream-141
Matrix_214AP1Not availableUpstream-138
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-141
Matrix_24POC1Not availableUpstream-136
Matrix_264ATAREB1Not availableUpstream-140
Matrix_300bZIP68;bZIP16Not availableUpstream-141
Matrix_331GBF1Not availableUpstream-141
Matrix_332SPT;ALCNot availableUpstream-141
Matrix_338AP2Not availableUpstream-137
Matrix_403BZR1Not availableUpstream-138
Matrix_414AGL15Not availableUpstream-109
Matrix_443AGL15Not availableUpstream-138
Matrix_488ABF1Not availableUpstream-139
Matrix_53MYC3Not availableUpstream-141
Upstream-142
Matrix_55PIF3Not availableUpstream-139
Matrix_7PIF4Not availableUpstream-141
Upstream-142
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-141
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-141
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-140
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-140
Upstream-141
Motif_244ABRE-like binding site motifNot availableUpstream-139
Upstream-141
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-141
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-141
Motif_419MYB4 binding site motifNot availableUpstream-160
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-141
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-187
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-142
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-142
Motif_638ABRE binding site motifNot availableUpstream-141
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-143
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-178
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-140