View conserved binding sites


Gene
AT3G02140
Description
AFP2 (ABI five-binding protein 2) family protein
Alias
Q9S7Z2;TWO OR MORE ABRES-CONTAINING GENE 2
Binding siteNameDescriptionLocationPosition
Matrix_1TOE2Not availableUpstream-1025
Matrix_104PINot availableUpstream-454
Upstream-514
Upstream-562
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-454
Matrix_109GBF3Not availableUpstream-454
Upstream-456
Upstream-562
Matrix_111ABF3Not availableUpstream-516
Matrix_113ABI5Not availableUpstream-454
Upstream-514
Upstream-516
Upstream-562
Matrix_117ANTNot availableUpstream-1429
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-452
Matrix_120BEE2Not availableUpstream-455
Matrix_122ABF1;AREB2Not availableUpstream-454
Upstream-514
Upstream-515
Upstream-563
Matrix_129ABF1Not availableUpstream-455
Upstream-515
Upstream-563
Matrix_130TCP16Not availableUpstream-583
Matrix_134ABF1Not availableUpstream-455
Upstream-515
Upstream-516
Upstream-563
Matrix_14ZCW32;AT5G62610Not availableUpstream-455
Matrix_144AT5G08330;AT5G23280Not availableUpstream-583
Matrix_145GBF4;AT5G44080Not availableUpstream-456
Upstream-564
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-451
Matrix_156POC1Not availableUpstream-454
Upstream-456
Upstream-562
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-444
Matrix_192FHY3/FAR1Not availableUpstream-452
Upstream-512
Upstream-516
Upstream-560
Matrix_194HYH;HY5Not availableUpstream-452
Upstream-512
Upstream-560
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-455
Matrix_214AP1Not availableUpstream-453
Upstream-561
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-452
Upstream-512
Upstream-560
Matrix_232TCP23Not availableUpstream-582
Matrix_24POC1Not availableUpstream-451
Matrix_247PIF3Not availableUpstream-455
Matrix_257NAC050;ANAC051;anac057;NAC2Not availableUpstream-449
Matrix_264ATAREB1Not availableUpstream-452
Upstream-512
Upstream-515
Upstream-563
Matrix_296GBF2Not availableUpstream-455
Matrix_297TCP15Not availableUpstream-582
Matrix_300bZIP68;bZIP16Not availableUpstream-455
Upstream-456
Upstream-563
Matrix_301PIL5Not availableUpstream-450
Matrix_331GBF1Not availableUpstream-454
Upstream-456
Upstream-562
Matrix_332SPT;ALCNot availableUpstream-455
Upstream-456
Upstream-563
Matrix_338AP2Not availableUpstream-452
Upstream-512
Upstream-560
Upstream-999
Matrix_345POC1Not availableUpstream-452
Matrix_348AT5G51910Not availableUpstream-583
Matrix_356PRR5Not availableUpstream-448
Upstream-452
Upstream-508
Upstream-512
Upstream-560
Upstream-999
Matrix_389ILR3Not availableUpstream-455
Matrix_403BZR1Not availableUpstream-453
Upstream-561
Matrix_42AT2G45680Not availableUpstream-583
Matrix_44CUC3;anac046;NAC3;ANAC087;ATNAC6;CUC2Not availableUpstream-451
Matrix_440LFYNot availableUpstream-1065
Matrix_443AGL15Not availableUpstream-453
Upstream-513
Upstream-561
Matrix_480BES1Not availableUpstream-454
Upstream-514
Upstream-562
Matrix_488ABF1Not availableUpstream-447
Upstream-454
Upstream-555
Matrix_511AT1G05805;AT1G35460;AT1G51140;AT2G42280;AT2G43140;AT4G09180Not availableUpstream-473
Matrix_53MYC3Not availableUpstream-453
Matrix_55PIF3Not availableUpstream-454
Upstream-562
Matrix_7PIF4Not availableUpstream-455
Upstream-563
Matrix_77PRR5Not availableUpstream-453
Matrix_80BIM1Not availableUpstream-454
Motif_141BP5OSWXOsBP-5 (a MYC protein) binding site in Wx promoterUpstream-531
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-989
Upstream-1803
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-1833
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-456
Upstream-516
Upstream-564
Motif_184PROXBBNNAPAprox B (proximal portion of B-box) found in napA gene of Brassica napus; CA-rich sequence; Found between -130 and -124; Required for seed specific expression and ABA responsiveness; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABREUpstream-1438
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-454
Upstream-562
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-455
Upstream-456
Upstream-515
Upstream-516
Upstream-532
Upstream-563
Upstream-564
Upstream-1002
Upstream-1577
Motif_244ABRE-like binding site motifNot availableUpstream-454
Upstream-456
Upstream-514
Upstream-516
Upstream-562
Upstream-564
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-454
Upstream-562
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-645
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-456
Upstream-516
Upstream-564
Upstream-1026
Motif_349QARBNEXTAQAR (quantitative activator region) in promoter region of Brassica napus extA extensin geneUpstream-1002
Upstream-1577
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-455
Upstream-456
Upstream-563
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-455
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-181
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-454
Upstream-562
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-532
Upstream-1003
Upstream-1577
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-454
Upstream-514
Upstream-517
Upstream-562
Upstream-1001
Upstream-1578
Motif_638ABRE binding site motifNot availableUpstream-454
Upstream-562
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-561
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-181
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-1373
Upstream-1384
Upstream-1439
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-514
Upstream-517
Upstream-1001
Upstream-1578
Motif_90GT1MOTIFPSRBCSGT-1 motif; Consensus sequence of rbcS BOX II, III, II', III'; GT-1 box; 5' upstream region (-151) of pea (P.s.) rbcS gene; binding with trans factor GT-1; See GT1COREUpstream-254
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-561
Upstream-1023