Matrix_1 | TOE2 | Not available | Upstream | -1025 |
Matrix_104 | PI | Not available | Upstream | -454 |
| | | Upstream | -514 |
| | | Upstream | -562 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -454 |
Matrix_109 | GBF3 | Not available | Upstream | -454 |
| | | Upstream | -456 |
| | | Upstream | -562 |
Matrix_111 | ABF3 | Not available | Upstream | -516 |
Matrix_113 | ABI5 | Not available | Upstream | -454 |
| | | Upstream | -514 |
| | | Upstream | -516 |
| | | Upstream | -562 |
Matrix_117 | ANT | Not available | Upstream | -1429 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -452 |
Matrix_120 | BEE2 | Not available | Upstream | -455 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -454 |
| | | Upstream | -514 |
| | | Upstream | -515 |
| | | Upstream | -563 |
Matrix_129 | ABF1 | Not available | Upstream | -455 |
| | | Upstream | -515 |
| | | Upstream | -563 |
Matrix_130 | TCP16 | Not available | Upstream | -583 |
Matrix_134 | ABF1 | Not available | Upstream | -455 |
| | | Upstream | -515 |
| | | Upstream | -516 |
| | | Upstream | -563 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -455 |
Matrix_144 | AT5G08330;AT5G23280 | Not available | Upstream | -583 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -456 |
| | | Upstream | -564 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -451 |
Matrix_156 | POC1 | Not available | Upstream | -454 |
| | | Upstream | -456 |
| | | Upstream | -562 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -444 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -452 |
| | | Upstream | -512 |
| | | Upstream | -516 |
| | | Upstream | -560 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -452 |
| | | Upstream | -512 |
| | | Upstream | -560 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -455 |
Matrix_214 | AP1 | Not available | Upstream | -453 |
| | | Upstream | -561 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -452 |
| | | Upstream | -512 |
| | | Upstream | -560 |
Matrix_232 | TCP23 | Not available | Upstream | -582 |
Matrix_24 | POC1 | Not available | Upstream | -451 |
Matrix_247 | PIF3 | Not available | Upstream | -455 |
Matrix_257 | NAC050;ANAC051;anac057;NAC2 | Not available | Upstream | -449 |
Matrix_264 | ATAREB1 | Not available | Upstream | -452 |
| | | Upstream | -512 |
| | | Upstream | -515 |
| | | Upstream | -563 |
Matrix_296 | GBF2 | Not available | Upstream | -455 |
Matrix_297 | TCP15 | Not available | Upstream | -582 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -455 |
| | | Upstream | -456 |
| | | Upstream | -563 |
Matrix_301 | PIL5 | Not available | Upstream | -450 |
Matrix_331 | GBF1 | Not available | Upstream | -454 |
| | | Upstream | -456 |
| | | Upstream | -562 |
Matrix_332 | SPT;ALC | Not available | Upstream | -455 |
| | | Upstream | -456 |
| | | Upstream | -563 |
Matrix_338 | AP2 | Not available | Upstream | -452 |
| | | Upstream | -512 |
| | | Upstream | -560 |
| | | Upstream | -999 |
Matrix_345 | POC1 | Not available | Upstream | -452 |
Matrix_348 | AT5G51910 | Not available | Upstream | -583 |
Matrix_356 | PRR5 | Not available | Upstream | -448 |
| | | Upstream | -452 |
| | | Upstream | -508 |
| | | Upstream | -512 |
| | | Upstream | -560 |
| | | Upstream | -999 |
Matrix_389 | ILR3 | Not available | Upstream | -455 |
Matrix_403 | BZR1 | Not available | Upstream | -453 |
| | | Upstream | -561 |
Matrix_42 | AT2G45680 | Not available | Upstream | -583 |
Matrix_44 | CUC3;anac046;NAC3;ANAC087;ATNAC6;CUC2 | Not available | Upstream | -451 |
Matrix_440 | LFY | Not available | Upstream | -1065 |
Matrix_443 | AGL15 | Not available | Upstream | -453 |
| | | Upstream | -513 |
| | | Upstream | -561 |
Matrix_480 | BES1 | Not available | Upstream | -454 |
| | | Upstream | -514 |
| | | Upstream | -562 |
Matrix_488 | ABF1 | Not available | Upstream | -447 |
| | | Upstream | -454 |
| | | Upstream | -555 |
Matrix_511 | AT1G05805;AT1G35460;AT1G51140;AT2G42280;AT2G43140;AT4G09180 | Not available | Upstream | -473 |
Matrix_53 | MYC3 | Not available | Upstream | -453 |
Matrix_55 | PIF3 | Not available | Upstream | -454 |
| | | Upstream | -562 |
Matrix_7 | PIF4 | Not available | Upstream | -455 |
| | | Upstream | -563 |
Matrix_77 | PRR5 | Not available | Upstream | -453 |
Matrix_80 | BIM1 | Not available | Upstream | -454 |
Motif_141 | BP5OSWX | OsBP-5 (a MYC protein) binding site in Wx promoter | Upstream | -531 |
Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | Upstream | -989 |
| | | Upstream | -1803 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Upstream | -1833 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -456 |
| | | Upstream | -516 |
| | | Upstream | -564 |
Motif_184 | PROXBBNNAPA | prox B (proximal portion of B-box) found in napA gene of Brassica napus; CA-rich sequence; Found between -130 and -124; Required for seed specific expression and ABA responsiveness; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE | Upstream | -1438 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -454 |
| | | Upstream | -562 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -455 |
| | | Upstream | -456 |
| | | Upstream | -515 |
| | | Upstream | -516 |
| | | Upstream | -532 |
| | | Upstream | -563 |
| | | Upstream | -564 |
| | | Upstream | -1002 |
| | | Upstream | -1577 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -454 |
| | | Upstream | -456 |
| | | Upstream | -514 |
| | | Upstream | -516 |
| | | Upstream | -562 |
| | | Upstream | -564 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -454 |
| | | Upstream | -562 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -645 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -456 |
| | | Upstream | -516 |
| | | Upstream | -564 |
| | | Upstream | -1026 |
Motif_349 | QARBNEXTA | QAR (quantitative activator region) in promoter region of Brassica napus extA extensin gene | Upstream | -1002 |
| | | Upstream | -1577 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -455 |
| | | Upstream | -456 |
| | | Upstream | -563 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -455 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -181 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -454 |
| | | Upstream | -562 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -532 |
| | | Upstream | -1003 |
| | | Upstream | -1577 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -454 |
| | | Upstream | -514 |
| | | Upstream | -517 |
| | | Upstream | -562 |
| | | Upstream | -1001 |
| | | Upstream | -1578 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -454 |
| | | Upstream | -562 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -561 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -181 |
Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | Upstream | -1373 |
| | | Upstream | -1384 |
| | | Upstream | -1439 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -514 |
| | | Upstream | -517 |
| | | Upstream | -1001 |
| | | Upstream | -1578 |
Motif_90 | GT1MOTIFPSRBCS | GT-1 motif; Consensus sequence of rbcS BOX II, III, II', III'; GT-1 box; 5' upstream region (-151) of pea (P.s.) rbcS gene; binding with trans factor GT-1; See GT1CORE | Upstream | -254 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -561 |
| | | Upstream | -1023 |