View conserved binding sites


Gene
AT2G38040
Description
acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit
Alias
Q9LD43;acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-575
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-577
Matrix_120BEE2Not availableUpstream-574
Matrix_122ABF1;AREB2Not availableUpstream-575
Matrix_129ABF1Not availableUpstream-582
Matrix_14ZCW32;AT5G62610Not availableUpstream-574
Upstream-573
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-578
Matrix_153AP2Not availableUpstream-575
Matrix_156POC1Not availableUpstream-581
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-574
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-574
Matrix_233MYC3Not availableUpstream-573
Matrix_24POC1Not availableUpstream-578
Matrix_25AP3Not availableUpstream-353
Matrix_301PIL5Not availableUpstream-587
Matrix_320MYC4Not availableUpstream-573
Matrix_323BIM3Not availableUpstream-574
Matrix_330MYC2;TT8Not availableUpstream-574
Matrix_332SPT;ALCNot availableUpstream-574
Upstream-573
Matrix_339bHLH104Not availableUpstream-574
Matrix_345POC1Not availableUpstream-577
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-573
Matrix_369AT2G18300Not availableUpstream-576
Upstream-574
Matrix_389ILR3Not availableUpstream-574
Matrix_403BZR1Not availableUpstream-584
Matrix_437MYC2Not availableUpstream-573
Matrix_449BIM2Not availableUpstream-574
Matrix_465MYC4Not availableUpstream-574
Matrix_476bHLH115;bHLH34Not availableUpstream-573
Matrix_480BES1Not availableUpstream-575
Upstream-574
Matrix_53MYC3Not availableUpstream-576
Upstream-572
Matrix_7PIF4Not availableUpstream-574
Matrix_77PRR5Not availableUpstream-576
Matrix_80BIM1Not availableUpstream-575
Upstream-573
Matrix_90BEE1;BEE3;AT3G07340;AT5G48560;AT5G50915Not availableUpstream-573
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-573
Upstream-571
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-572
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-531
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-572
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-573
Upstream-572
Upstream-435
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-529
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-531
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-530
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-434
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-572
Motif_419MYB4 binding site motifNot availableUpstream-531
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisUpstream-531
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-570
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-575