| Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -342 |
| | | Upstream | -1680 |
| Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -1681 |
| Matrix_386 | AGL1 | DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation | Upstream | -446 |
| Motif_110 | AGATCONSENSUS | Binding consensus sequence for the product of the Arabidopsis floral homeotic gene AGAMOUS (AG); AG protein contains a region similar to the DNA binding domain of SRF and MCM1; The consensus sequence contains a CArG box; AG protein is a putative transcription factor for floral genes; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development | Upstream | -446 |
| Motif_278 | CELLCYCLESC | cell cycle box found in URS2 (-940/-200) of HO gene of S.cerevisiae; cell-cycle-specific activation of transcription | Upstream | -209 |
| Motif_688 | AMMORESIVDCRNIA1 | Motif (IVD) found in the Chlamydomonas Nia1 gene promoter; Located between -51 and -42; Involved in Nia1 transcription repression | Upstream | -493 |
| | | Upstream | -1663 |
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