Matrix_101 | ERF5 | Not available | Intron | 1275 |
Matrix_208 | AP1 | Not available | Intron | 1555 |
Matrix_224 | ERF1 | Not available | Intron | 1276 |
Matrix_25 | AP3 | Not available | Intron | 1623 |
| | | Intron | 648 |
Matrix_277 | RAP2.6 | Not available | Intron | 2300 |
Matrix_287 | ERF2 | Not available | Intron | 1275 |
Matrix_295 | ERF1 | Not available | Intron | 1275 |
Matrix_334 | AT3G23230 | Not available | Intron | 1274 |
Matrix_343 | AT2G33710 | Not available | Intron | 1278 |
| | | Intron | 1275 |
Matrix_360 | ORA59 | Not available | Intron | 1275 |
Matrix_364 | FLC | Not available | Intron | 715 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Intron | 1275 |
Matrix_396 | AP3 | Not available | Intron | 1483 |
Matrix_405 | DREB2C | Not available | Intron | 2302 |
Matrix_414 | AGL15 | Not available | Intron | 1631 |
| | | Intron | 1618 |
| | | Intron | 532 |
Matrix_426 | CRF1;CRF2 | Not available | Intron | 1274 |
Matrix_48 | PI | Not available | Upstream | -1479 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Intron | 1276 |
Matrix_506 | DRNL;ATERF-4 | Not available | Intron | 1277 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -51 |
| | | Upstream | -304 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Upstream | -1525 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -1551 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -68 |
| | | Upstream | -673 |
| | | Upstream | -1799 |
| | | Upstream | -1804 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Intron | 1275 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Intron | 1275 |
Motif_329 | AMMORESIIUDCRNIA1 | Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activation | Upstream | -1518 |
Motif_34 | LECPLEACS2 | Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene | Upstream | -476 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -246 |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Upstream | -1522 |
Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | Upstream | -1904 |
| | | Upstream | -1919 |
| | | Upstream | -1936 |
Motif_645 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -1551 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -90 |
| | | Upstream | -92 |
| | | Upstream | -94 |
| | | Upstream | -96 |
| | | Upstream | -98 |
Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | Intron | 1465 |