View conserved binding sites


Gene
AT2G26580
Description
plant-specific transcription factor YABBY family protein
Alias
Q8GW46;YAB5
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableIntron1275
Matrix_208AP1Not availableIntron1555
Matrix_224ERF1Not availableIntron1276
Matrix_25AP3Not availableIntron1623
Intron648
Matrix_277RAP2.6Not availableIntron2300
Matrix_287ERF2Not availableIntron1275
Matrix_295ERF1Not availableIntron1275
Matrix_334AT3G23230Not availableIntron1274
Matrix_343AT2G33710Not availableIntron1278
Intron1275
Matrix_360ORA59Not availableIntron1275
Matrix_364FLCNot availableIntron715
Matrix_374AT5G07580;AT5G61590Not availableIntron1275
Matrix_396AP3Not availableIntron1483
Matrix_405DREB2CNot availableIntron2302
Matrix_414AGL15Not availableIntron1631
Intron1618
Intron532
Matrix_426CRF1;CRF2Not availableIntron1274
Matrix_48PINot availableUpstream-1479
Matrix_50ATERF14;AT5G43410Not availableIntron1276
Matrix_506DRNL;ATERF-4Not availableIntron1277
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-51
Upstream-304
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFUpstream-1525
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-1551
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-68
Upstream-673
Upstream-1799
Upstream-1804
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureIntron1275
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxIntron1275
Motif_329AMMORESIIUDCRNIA1Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activationUpstream-1518
Motif_34LECPLEACS2Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 geneUpstream-476
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-246
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-1522
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneUpstream-1904
Upstream-1919
Upstream-1936
Motif_645BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-1551
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-90
Upstream-92
Upstream-94
Upstream-96
Upstream-98
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneIntron1465