| Matrix_226 | GATA1 | Not available | Upstream | -327 |
| Matrix_230 | ARR11 | Not available | Upstream | -327 |
| Matrix_279 | HRS1 | Not available | Upstream | -344 |
| Matrix_286 | GATA7 | Not available | Upstream | -327 |
| Matrix_333 | GATA3 | Not available | Upstream | -328 |
| Matrix_350 | ARR14 | Not available | Upstream | -327 |
| Matrix_362 | DEAR3 | Not available | Upstream | -325 |
| Matrix_407 | AP1 | Not available | Intron | 498 |
| Matrix_408 | GATA12 | Not available | Upstream | -327 |
| Matrix_502 | AT3G13040 | Not available | Upstream | -346 |
| Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -70 |
| Motif_223 | LTRE1HVBLT49 | LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGAC | Upstream | -339 |
| Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Upstream | -198 |
| Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -196 |
| Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | Upstream | -320 |
| Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -322 |
| Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -335 |
| Motif_426 | MYB58;MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Upstream | -68 |
| Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -336 |
Expansion plot
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Synteny plot
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Functional clusters
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