View conserved binding sites


Gene
AT2G01140
Description
Aldolase superfamily protein
Alias
Q9ZU52;AtFBA3
Binding siteNameDescriptionLocationPosition
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-148
Matrix_371MYB7;AtMYB6;AtMYB32;ATMYB4Not availableUpstream-1465
Matrix_438AtbZIP63Not availableUpstream-558
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-148
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-12
Upstream-618
Upstream-662
Upstream-1464
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-149
Upstream-951
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-62
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-52
Motif_348WBBOXPCWRKY1WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in ArabidopsisUpstream-870
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-62
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisUpstream-1464
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-148
Upstream-951
Upstream-1464
Upstream-1829
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-1464
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-67