View conserved binding sites


Gene
AT1G78390
Description
nine-cis-epoxycarotenoid dioxygenase 9
Alias
NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9;Q9M9F5
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-26
Matrix_113ABI5Not availableUpstream-28
Matrix_122ABF1;AREB2Not availableUpstream-27
Matrix_134ABF1Not availableUpstream-28
Matrix_192FHY3/FAR1Not availableUpstream-28
Matrix_264ATAREB1Not availableUpstream-27
Matrix_443AGL15Not availableUpstream-25
Matrix_480BES1Not availableUpstream-27
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Downstream2071
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-28
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-27
Upstream-28
Upstream-1038
Upstream-1285
Motif_244ABRE-like binding site motifNot availableUpstream-28
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-28
Upstream-389
Upstream-904
Upstream-1081
Motif_614MYBGAHVCentral element of gibberellin (GA) response complex (GARC) in high-pI alpha-amylase gene in barley; Similar to c-myb and v-myb consensus binding site; GAmyb binds specifically to the TAACAAA box in vitro; GAmyb is the sole GA-regulated transcriptional factor required for transcriptional activation of the high-pI alpha-amylase; GARC consist of the pyrimidine, TAACAAA and TATCCAC boxes; GARE in RAmy1A gene; GARE and pyrimidine box in RAmy1A are partially involved in sugar repressionUpstream-327
Upstream-1344
Upstream-1502
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-29
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-29
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-1078