View conserved binding sites


Gene
AT1G75520
Description
SHI-related sequence 5
Alias
Q9LQZ5;SHI-related sequence 5
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-863
Matrix_109GBF3Not availableUpstream-862
Upstream-863
Matrix_113ABI5Not availableUpstream-862
Upstream-863
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-860
Matrix_119RRTF1Not availableUpstream-142
Upstream-143
Upstream-1964
Matrix_122ABF1;AREB2Not availableUpstream-864
Matrix_129ABF1Not availableUpstream-863
Upstream-864
Matrix_134ABF1Not availableUpstream-863
Upstream-864
Matrix_138RRTF1Not availableUpstream-142
Upstream-143
Upstream-1964
Matrix_145GBF4;AT5G44080Not availableUpstream-864
Upstream-865
Matrix_147ERF3;AT1G80580Not availableUpstream-143
Upstream-144
Matrix_156POC1Not availableUpstream-862
Upstream-863
Upstream-1945
Matrix_161MYBC1;AT3G10760;LUX;AT5G05090;AT5G59570Not availableDownstream1905
Matrix_184AGL15Not availableDownstream1479
Matrix_192FHY3/FAR1Not availableUpstream-860
Upstream-861
Matrix_194HYH;HY5Not availableUpstream-861
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-860
Upstream-861
Matrix_224ERF1Not availableUpstream-142
Upstream-143
Matrix_234RAP2.3Not availableUpstream-142
Matrix_261ATERF-1Not availableUpstream-142
Upstream-143
Matrix_264ATAREB1Not availableUpstream-860
Upstream-861
Upstream-864
Matrix_285DDF1Not availableUpstream-143
Upstream-144
Matrix_287ERF2Not availableUpstream-142
Matrix_288RAP2.3Not availableUpstream-142
Upstream-143
Upstream-1964
Matrix_295ERF1Not availableUpstream-143
Upstream-144
Matrix_300bZIP68;bZIP16Not availableUpstream-863
Upstream-864
Matrix_301PIL5Not availableUpstream-858
Upstream-859
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-142
Upstream-143
Matrix_331GBF1Not availableUpstream-862
Upstream-863
Matrix_332SPT;ALCNot availableUpstream-863
Upstream-864
Matrix_334AT3G23230Not availableUpstream-142
Upstream-143
Matrix_338AP2Not availableUpstream-861
Matrix_343AT2G33710Not availableUpstream-142
Matrix_355ERF10;ERF11Not availableUpstream-142
Upstream-143
Matrix_356PRR5Not availableUpstream-857
Matrix_360ORA59Not availableUpstream-143
Upstream-144
Matrix_363RAP2.3Not availableUpstream-142
Upstream-143
Upstream-1964
Matrix_371MYB7;AtMYB6;AtMYB32;ATMYB4Not availableDownstream1852
Matrix_378ATERF1Not availableUpstream-142
Matrix_403BZR1Not availableUpstream-862
Matrix_406ATERF-7Not availableUpstream-143
Upstream-144
Matrix_407AP1Not availableDownstream1478
Matrix_420ANAC58Not availableIntron792
Intron791
Matrix_426CRF1;CRF2Not availableUpstream-142
Upstream-143
Matrix_434ARR11Not availableUpstream-283
Matrix_443AGL15Not availableUpstream-862
Matrix_45DRNNot availableUpstream-143
Upstream-144
Matrix_462ATERF-8Not availableUpstream-143
Upstream-144
Matrix_473RRTF1Not availableUpstream-142
Upstream-1965
Matrix_480BES1Not availableUpstream-862
Upstream-863
Matrix_484ATERF13Not availableUpstream-143
Upstream-144
Matrix_488ABF1Not availableUpstream-863
Upstream-1943
Matrix_493AT1G22985;AT1G71130Not availableUpstream-142
Upstream-143
Upstream-1965
Matrix_50ATERF14;AT5G43410Not availableUpstream-142
Upstream-143
Matrix_506DRNL;ATERF-4Not availableUpstream-142
Upstream-143
Matrix_517ERF12Not availableUpstream-143
Upstream-144
Matrix_53MYC3Not availableUpstream-861
Upstream-862
Matrix_55PIF3Not availableUpstream-863
Upstream-1943
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-142
Upstream-143
Matrix_63ARR10Not availableDownstream1903
Matrix_64PIF5Not availableUpstream-1945
Matrix_7PIF4Not availableUpstream-863
Upstream-864
Matrix_74LFYNot availableDownstream1479
Matrix_77PRR5Not availableUpstream-863
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-142
Upstream-143
Matrix_91CRF3Not availableUpstream-142
Upstream-143
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Downstream1476
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-287
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisDownstream1886
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-865
Upstream-1945
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-312
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroDownstream1851
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Intron786
Upstream-865
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-965
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-863
Motif_210REBETALGLHCB21REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulationDownstream1887
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-556
Upstream-864
Upstream-865
Upstream-1945
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-312
Motif_244ABRE-like binding site motifNot availableUpstream-863
Upstream-1945
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-865
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesDownstream1851
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-863
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesDownstream1850
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-315
Motif_310ANAERO3CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curatorUpstream-167
Upstream-956
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-144
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-312
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-865
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-1103
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorDownstream1479
Downstream1473
Motif_419MYB4 binding site motifNot availableDownstream1851
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisDownstream1851
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-236
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-864
Upstream-1945
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsDownstream1879
Motif_469QELEMENTZMZM13Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize geneUpstream-1407
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaIntron792
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisDownstream1852
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-863
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteDownstream1873
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream1478
Downstream1472
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisDownstream1825
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-863
Motif_638ABRE binding site motifNot availableUpstream-863
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-862
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream1885
Downstream1876
Downstream1875
Upstream-65
Upstream-250
Upstream-884
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesDownstream1852
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream1478
Downstream1472
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionDownstream1875
Upstream-250
Upstream-884
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-235
Upstream-237
Upstream-239
Upstream-241
Upstream-243
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-33
Upstream-868
Motif_88MYB2ATBinding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in ArabidopsisUpstream-312
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-862