Matrix_104 | PI | Not available | Upstream | -863 |
Matrix_109 | GBF3 | Not available | Upstream | -862 |
| | | Upstream | -863 |
Matrix_113 | ABI5 | Not available | Upstream | -862 |
| | | Upstream | -863 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -860 |
Matrix_119 | RRTF1 | Not available | Upstream | -142 |
| | | Upstream | -143 |
| | | Upstream | -1964 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -864 |
Matrix_129 | ABF1 | Not available | Upstream | -863 |
| | | Upstream | -864 |
Matrix_134 | ABF1 | Not available | Upstream | -863 |
| | | Upstream | -864 |
Matrix_138 | RRTF1 | Not available | Upstream | -142 |
| | | Upstream | -143 |
| | | Upstream | -1964 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -864 |
| | | Upstream | -865 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -143 |
| | | Upstream | -144 |
Matrix_156 | POC1 | Not available | Upstream | -862 |
| | | Upstream | -863 |
| | | Upstream | -1945 |
Matrix_161 | MYBC1;AT3G10760;LUX;AT5G05090;AT5G59570 | Not available | Downstream | 1905 |
Matrix_184 | AGL15 | Not available | Downstream | 1479 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -860 |
| | | Upstream | -861 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -861 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -860 |
| | | Upstream | -861 |
Matrix_224 | ERF1 | Not available | Upstream | -142 |
| | | Upstream | -143 |
Matrix_234 | RAP2.3 | Not available | Upstream | -142 |
Matrix_261 | ATERF-1 | Not available | Upstream | -142 |
| | | Upstream | -143 |
Matrix_264 | ATAREB1 | Not available | Upstream | -860 |
| | | Upstream | -861 |
| | | Upstream | -864 |
Matrix_285 | DDF1 | Not available | Upstream | -143 |
| | | Upstream | -144 |
Matrix_287 | ERF2 | Not available | Upstream | -142 |
Matrix_288 | RAP2.3 | Not available | Upstream | -142 |
| | | Upstream | -143 |
| | | Upstream | -1964 |
Matrix_295 | ERF1 | Not available | Upstream | -143 |
| | | Upstream | -144 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -863 |
| | | Upstream | -864 |
Matrix_301 | PIL5 | Not available | Upstream | -858 |
| | | Upstream | -859 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -142 |
| | | Upstream | -143 |
Matrix_331 | GBF1 | Not available | Upstream | -862 |
| | | Upstream | -863 |
Matrix_332 | SPT;ALC | Not available | Upstream | -863 |
| | | Upstream | -864 |
Matrix_334 | AT3G23230 | Not available | Upstream | -142 |
| | | Upstream | -143 |
Matrix_338 | AP2 | Not available | Upstream | -861 |
Matrix_343 | AT2G33710 | Not available | Upstream | -142 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -142 |
| | | Upstream | -143 |
Matrix_356 | PRR5 | Not available | Upstream | -857 |
Matrix_360 | ORA59 | Not available | Upstream | -143 |
| | | Upstream | -144 |
Matrix_363 | RAP2.3 | Not available | Upstream | -142 |
| | | Upstream | -143 |
| | | Upstream | -1964 |
Matrix_371 | MYB7;AtMYB6;AtMYB32;ATMYB4 | Not available | Downstream | 1852 |
Matrix_378 | ATERF1 | Not available | Upstream | -142 |
Matrix_403 | BZR1 | Not available | Upstream | -862 |
Matrix_406 | ATERF-7 | Not available | Upstream | -143 |
| | | Upstream | -144 |
Matrix_407 | AP1 | Not available | Downstream | 1478 |
Matrix_420 | ANAC58 | Not available | Intron | 792 |
| | | Intron | 791 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -142 |
| | | Upstream | -143 |
Matrix_434 | ARR11 | Not available | Upstream | -283 |
Matrix_443 | AGL15 | Not available | Upstream | -862 |
Matrix_45 | DRN | Not available | Upstream | -143 |
| | | Upstream | -144 |
Matrix_462 | ATERF-8 | Not available | Upstream | -143 |
| | | Upstream | -144 |
Matrix_473 | RRTF1 | Not available | Upstream | -142 |
| | | Upstream | -1965 |
Matrix_480 | BES1 | Not available | Upstream | -862 |
| | | Upstream | -863 |
Matrix_484 | ATERF13 | Not available | Upstream | -143 |
| | | Upstream | -144 |
Matrix_488 | ABF1 | Not available | Upstream | -863 |
| | | Upstream | -1943 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -142 |
| | | Upstream | -143 |
| | | Upstream | -1965 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -142 |
| | | Upstream | -143 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -142 |
| | | Upstream | -143 |
Matrix_517 | ERF12 | Not available | Upstream | -143 |
| | | Upstream | -144 |
Matrix_53 | MYC3 | Not available | Upstream | -861 |
| | | Upstream | -862 |
Matrix_55 | PIF3 | Not available | Upstream | -863 |
| | | Upstream | -1943 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -142 |
| | | Upstream | -143 |
Matrix_63 | ARR10 | Not available | Downstream | 1903 |
Matrix_64 | PIF5 | Not available | Upstream | -1945 |
Matrix_7 | PIF4 | Not available | Upstream | -863 |
| | | Upstream | -864 |
Matrix_74 | LFY | Not available | Downstream | 1479 |
Matrix_77 | PRR5 | Not available | Upstream | -863 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -142 |
| | | Upstream | -143 |
Matrix_91 | CRF3 | Not available | Upstream | -142 |
| | | Upstream | -143 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Downstream | 1476 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -287 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Downstream | 1886 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -865 |
| | | Upstream | -1945 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -312 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Downstream | 1851 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Intron | 786 |
| | | Upstream | -865 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -965 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -863 |
Motif_210 | REBETALGLHCB21 | REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulation | Downstream | 1887 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -556 |
| | | Upstream | -864 |
| | | Upstream | -865 |
| | | Upstream | -1945 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -312 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -863 |
| | | Upstream | -1945 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -865 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Downstream | 1851 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -863 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Downstream | 1850 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -315 |
Motif_310 | ANAERO3CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator | Upstream | -167 |
| | | Upstream | -956 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -144 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -312 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -865 |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Upstream | -1103 |
Motif_410 | ANAERO1CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator | Downstream | 1479 |
| | | Downstream | 1473 |
Motif_419 | MYB4 binding site motif | Not available | Downstream | 1851 |
Motif_426 | MYB58;MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Downstream | 1851 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -236 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -864 |
| | | Upstream | -1945 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Downstream | 1879 |
Motif_469 | QELEMENTZMZM13 | Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene | Upstream | -1407 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Intron | 792 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Downstream | 1852 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -863 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Downstream | 1873 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 1478 |
| | | Downstream | 1472 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Downstream | 1825 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -863 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -863 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -862 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 1885 |
| | | Downstream | 1876 |
| | | Downstream | 1875 |
| | | Upstream | -65 |
| | | Upstream | -250 |
| | | Upstream | -884 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Downstream | 1852 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 1478 |
| | | Downstream | 1472 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Downstream | 1875 |
| | | Upstream | -250 |
| | | Upstream | -884 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -235 |
| | | Upstream | -237 |
| | | Upstream | -239 |
| | | Upstream | -241 |
| | | Upstream | -243 |
Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | Upstream | -33 |
| | | Upstream | -868 |
Motif_88 | MYB2AT | Binding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis | Upstream | -312 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -862 |