View conserved binding sites


Gene
AT1G61340
Description
F-box family protein
Alias
Q8GX77;FBS1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-506
Matrix_109GBF3Not availableUpstream-559
Matrix_113ABI5Not availableUpstream-504
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-541
Matrix_122ABF1;AREB2Not availableUpstream-505
Matrix_129ABF1Not availableUpstream-505
Matrix_145GBF4;AT5G44080Not availableUpstream-504
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-509
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-693
Matrix_166TGA4Not availableUpstream-557
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-540
Matrix_192FHY3/FAR1Not availableUpstream-504
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-561
Matrix_24POC1Not availableUpstream-509
Matrix_247PIF3Not availableUpstream-537
Matrix_259AT1G50680;AT1G51120Not availableUpstream-537
Matrix_264ATAREB1Not availableUpstream-505
Matrix_278AtbZIP44Not availableUpstream-559
Matrix_296GBF2Not availableUpstream-558
Matrix_300bZIP68;bZIP16Not availableUpstream-558
Upstream-504
Matrix_301PIL5Not availableUpstream-504
Matrix_306TGA1TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-557
Matrix_311TGA1Not availableUpstream-557
Matrix_331GBF1Not availableUpstream-559
Matrix_338AP2Not availableUpstream-508
Matrix_345POC1Not availableUpstream-541
Matrix_359FLCNot availableUpstream-507
Matrix_387ORA47Not availableUpstream-693
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-692
Matrix_399TGA1Not availableUpstream-557
Matrix_438AtbZIP63Not availableUpstream-558
Matrix_443AGL15Not availableUpstream-507
Matrix_456bZIP60Not availableUpstream-558
Matrix_457TGA2Not availableUpstream-556
Matrix_502AT3G13040Not availableUpstream-1245
Matrix_55PIF3Not availableUpstream-506
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-557
Matrix_77PRR5Not availableUpstream-506
Motif_141BP5OSWXOsBP-5 (a MYC protein) binding site in Wx promoterUpstream-535
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-503
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-489
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-503
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-536
Upstream-504
Upstream-503
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-489
Motif_244ABRE-like binding site motifNot availableUpstream-558
Upstream-503
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-503
Motif_275AtbZIP1The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA bindingUpstream-558
Motif_332SV40COREENHANSV40 core enhancer; Similar sequences found in rbcS genesUpstream-544
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-489
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-556
Upstream-503
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-531
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-557
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-557
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-504
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-555
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-690
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-548
Motif_536TBOXATGAPBTbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thalianaUpstream-513
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-558
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-535
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-555
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-558
Upstream-502
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-690
Motif_652AUXRETGA2GMGH3TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224Upstream-558
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-502
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-506