View conserved binding sites


Gene
AT1G48410
Description
Stabilizer of iron transporter SufD / Polynucleotidyl transferase
Alias
O04379;ARGONAUTE 1
Binding siteNameDescriptionLocationPosition
Matrix_109GBF3Not availableUpstream-774
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-774
Matrix_224ERF1Not availableUpstream-521
Matrix_244DREB2CNot availableUpstream-521
Matrix_252RAP2.6Not availableUpstream-520
Matrix_261ATERF-1Not availableUpstream-521
Matrix_296GBF2Not availableUpstream-774
Matrix_300bZIP68;bZIP16Not availableUpstream-774
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-521
Matrix_331GBF1Not availableUpstream-774
Matrix_334AT3G23230Not availableUpstream-521
Matrix_350ARR14Not availableUpstream-442
Matrix_355ERF10;ERF11Not availableUpstream-521
Matrix_378ATERF1Not availableUpstream-520
Matrix_396AP3Not availableUpstream-126
Matrix_406ATERF-7Not availableUpstream-522
Matrix_438AtbZIP63Not availableUpstream-771
Upstream-851
Matrix_456bZIP60Not availableUpstream-853
Matrix_462ATERF-8Not availableUpstream-522
Matrix_493AT1G22985;AT1G71130Not availableUpstream-521
Matrix_497AP3Not availableUpstream-29
Matrix_50ATERF14;AT5G43410Not availableUpstream-521
Matrix_506DRNL;ATERF-4Not availableUpstream-521
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-521
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-521
Matrix_91CRF3Not availableUpstream-521
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-635
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1644
Motif_184PROXBBNNAPAprox B (proximal portion of B-box) found in napA gene of Brassica napus; CA-rich sequence; Found between -130 and -124; Required for seed specific expression and ABA responsiveness; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABREUpstream-508
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-126
Motif_323MYB1LEPRTomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG))Upstream-1033
Upstream-1095
Motif_347OPAQUE2ZMB32opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC)Upstream-851
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-126
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-853
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisUpstream-594
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-853
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-775
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-593
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-640
Upstream-642
Upstream-644
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-341
Upstream-486
Upstream-508