Matrix_101 | ERF5 | Not available | Upstream | -337 |
| | | Upstream | -340 |
| | | Upstream | -343 |
Matrix_109 | GBF3 | Not available | Upstream | -606 |
| | | Upstream | -607 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -338 |
| | | Upstream | -339 |
| | | Upstream | -341 |
| | | Upstream | -342 |
| | | Upstream | -344 |
| | | Upstream | -345 |
Matrix_119 | RRTF1 | Not available | Upstream | -339 |
| | | Upstream | -342 |
Matrix_138 | RRTF1 | Not available | Upstream | -339 |
| | | Upstream | -342 |
Matrix_146 | ORA47 | Not available | Upstream | -340 |
| | | Upstream | -343 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -340 |
| | | Upstream | -341 |
| | | Upstream | -343 |
| | | Upstream | -344 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -341 |
| | | Upstream | -342 |
| | | Upstream | -344 |
| | | Upstream | -345 |
Matrix_190 | ATERF1 | Not available | Upstream | -337 |
| | | Upstream | -338 |
| | | Upstream | -339 |
| | | Upstream | -340 |
| | | Upstream | -341 |
| | | Upstream | -342 |
| | | Upstream | -344 |
| | | Upstream | -345 |
| | | Upstream | -347 |
| | | Upstream | -348 |
| | | Upstream | -353 |
| | | Upstream | -354 |
| | | Upstream | -368 |
| | | Upstream | -369 |
Matrix_224 | ERF1 | Not available | Upstream | -339 |
| | | Upstream | -340 |
| | | Upstream | -342 |
| | | Upstream | -343 |
| | | Upstream | -345 |
| | | Upstream | -346 |
| | | Upstream | -348 |
| | | Upstream | -349 |
| | | Upstream | -354 |
| | | Upstream | -355 |
| | | Upstream | -369 |
| | | Upstream | -370 |
Matrix_234 | RAP2.3 | Not available | Upstream | -337 |
| | | Upstream | -340 |
| | | Upstream | -343 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -341 |
| | | Upstream | -342 |
| | | Upstream | -344 |
| | | Upstream | -345 |
Matrix_244 | DREB2C | Not available | Upstream | -351 |
| | | Upstream | -357 |
Matrix_252 | RAP2.6 | Not available | Upstream | -337 |
| | | Upstream | -338 |
| | | Upstream | -340 |
| | | Upstream | -341 |
| | | Upstream | -342 |
| | | Upstream | -343 |
| | | Upstream | -344 |
| | | Upstream | -346 |
| | | Upstream | -347 |
Matrix_261 | ATERF-1 | Not available | Upstream | -337 |
| | | Upstream | -338 |
| | | Upstream | -340 |
| | | Upstream | -341 |
| | | Upstream | -343 |
| | | Upstream | -344 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -283 |
| | | Upstream | -284 |
| | | Upstream | -444 |
| | | Upstream | -445 |
| | | Upstream | -448 |
Matrix_272 | DEAR4 | Not available | Upstream | -340 |
| | | Upstream | -343 |
Matrix_287 | ERF2 | Not available | Upstream | -337 |
| | | Upstream | -340 |
| | | Upstream | -343 |
Matrix_288 | RAP2.3 | Not available | Upstream | -339 |
| | | Upstream | -342 |
Matrix_295 | ERF1 | Not available | Upstream | -340 |
| | | Upstream | -343 |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -603 |
| | | Upstream | -604 |
Matrix_315 | MYB111 | Not available | Upstream | -736 |
Matrix_321 | HRD | Not available | Upstream | -337 |
| | | Upstream | -340 |
| | | Upstream | -343 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -336 |
| | | Upstream | -339 |
| | | Upstream | -342 |
Matrix_334 | AT3G23230 | Not available | Upstream | -341 |
| | | Upstream | -344 |
Matrix_343 | AT2G33710 | Not available | Upstream | -337 |
| | | Upstream | -338 |
| | | Upstream | -340 |
| | | Upstream | -341 |
| | | Upstream | -343 |
| | | Upstream | -344 |
| | | Upstream | -346 |
| | | Upstream | -347 |
| | | Upstream | -352 |
| | | Upstream | -353 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -340 |
| | | Upstream | -341 |
| | | Upstream | -343 |
| | | Upstream | -344 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -339 |
| | | Upstream | -342 |
Matrix_360 | ORA59 | Not available | Upstream | -340 |
| | | Upstream | -341 |
| | | Upstream | -343 |
| | | Upstream | -344 |
Matrix_363 | RAP2.3 | Not available | Upstream | -339 |
| | | Upstream | -342 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Upstream | -254 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -340 |
| | | Upstream | -341 |
| | | Upstream | -343 |
| | | Upstream | -344 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -337 |
| | | Upstream | -340 |
| | | Upstream | -343 |
| | | Upstream | -346 |
| | | Upstream | -352 |
| | | Upstream | -358 |
Matrix_378 | ATERF1 | Not available | Upstream | -337 |
| | | Upstream | -338 |
| | | Upstream | -340 |
| | | Upstream | -341 |
| | | Upstream | -343 |
| | | Upstream | -344 |
| | | Upstream | -346 |
| | | Upstream | -347 |
| | | Upstream | -352 |
| | | Upstream | -353 |
Matrix_385 | DEAR4 | Not available | Upstream | -351 |
| | | Upstream | -357 |
Matrix_394 | DREB_U | Not available | Upstream | -336 |
| | | Upstream | -351 |
| | | Upstream | -357 |
Matrix_405 | DREB2C | Not available | Upstream | -341 |
Matrix_406 | ATERF-7 | Not available | Upstream | -338 |
| | | Upstream | -339 |
| | | Upstream | -341 |
| | | Upstream | -342 |
Matrix_409 | DEAR3 | Not available | Upstream | -336 |
| | | Upstream | -339 |
| | | Upstream | -342 |
| | | Upstream | -345 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -341 |
| | | Upstream | -344 |
Matrix_448 | ATERF6 | Not available | Upstream | -342 |
| | | Upstream | -343 |
Matrix_45 | DRN | Not available | Upstream | -340 |
| | | Upstream | -341 |
| | | Upstream | -343 |
| | | Upstream | -344 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -336 |
| | | Upstream | -339 |
| | | Upstream | -342 |
| | | Upstream | -345 |
| | | Upstream | -351 |
| | | Upstream | -357 |
Matrix_462 | ATERF-8 | Not available | Upstream | -338 |
| | | Upstream | -339 |
| | | Upstream | -341 |
| | | Upstream | -342 |
Matrix_47 | AtMYB77 | Not available | Upstream | -343 |
Matrix_473 | RRTF1 | Not available | Upstream | -337 |
| | | Upstream | -338 |
| | | Upstream | -340 |
| | | Upstream | -341 |
| | | Upstream | -343 |
| | | Upstream | -344 |
| | | Upstream | -352 |
| | | Upstream | -353 |
Matrix_484 | ATERF13 | Not available | Upstream | -340 |
| | | Upstream | -343 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -337 |
| | | Upstream | -340 |
| | | Upstream | -343 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -339 |
| | | Upstream | -342 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -338 |
| | | Upstream | -341 |
| | | Upstream | -344 |
Matrix_515 | ddf2;ATCBF3;CBF1;CBF4 | Not available | Upstream | -335 |
Matrix_517 | ERF12 | Not available | Upstream | -340 |
| | | Upstream | -341 |
| | | Upstream | -343 |
| | | Upstream | -344 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -336 |
| | | Upstream | -337 |
| | | Upstream | -339 |
| | | Upstream | -340 |
| | | Upstream | -342 |
| | | Upstream | -343 |
| | | Upstream | -345 |
| | | Upstream | -346 |
| | | Upstream | -348 |
| | | Upstream | -349 |
| | | Upstream | -351 |
| | | Upstream | -352 |
| | | Upstream | -354 |
| | | Upstream | -355 |
| | | Upstream | -357 |
| | | Upstream | -358 |
| | | Upstream | -369 |
| | | Upstream | -370 |
Matrix_61 | ATCBF3 | Not available | Upstream | -336 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -341 |
| | | Upstream | -342 |
| | | Upstream | -344 |
| | | Upstream | -345 |
Matrix_91 | CRF3 | Not available | Upstream | -337 |
| | | Upstream | -338 |
| | | Upstream | -340 |
| | | Upstream | -341 |
| | | Upstream | -343 |
| | | Upstream | -344 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -252 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Upstream | -582 |
Motif_202 | OPAQUE2ZM22Z | Opaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02 | Upstream | -605 |
Motif_210 | REBETALGLHCB21 | REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulation | Upstream | -1730 |
Motif_216 | PYRIMIDINEBOXHVEPB1 | Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA induction | Upstream | -455 |
| | | Upstream | -1918 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -569 |
| | | Upstream | -575 |
| | | Upstream | -686 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -607 |
Motif_262 | WRKY70 | Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thaliana | Upstream | -331 |
| | | Upstream | -1790 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -341 |
| | | Upstream | -344 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -607 |
Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | Upstream | -623 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -432 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -337 |
| | | Upstream | -396 |
Motif_43 | CCA1 binding site motif | CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene | Upstream | -253 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -338 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Upstream | -260 |
| | | Upstream | -716 |
| | | Upstream | -736 |
| | | Upstream | -1894 |
Motif_543 | TATCCACHVAL21 | TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA response | Upstream | -1697 |
Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Upstream | -285 |
| | | Upstream | -446 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -585 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -338 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -73 |
| | | Upstream | -74 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -564 |
| | | Upstream | -583 |
| | | Upstream | -681 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -716 |
| | | Upstream | -736 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -583 |