View conserved binding sites


Gene
AT1G35580
Description
cytosolic invertase 1
Alias
cytosolic invertase 1;Q9LQF2
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-337
Upstream-340
Upstream-343
Matrix_109GBF3Not availableUpstream-606
Upstream-607
Matrix_110ATABI4;AT3G57600Not availableUpstream-338
Upstream-339
Upstream-341
Upstream-342
Upstream-344
Upstream-345
Matrix_119RRTF1Not availableUpstream-339
Upstream-342
Matrix_138RRTF1Not availableUpstream-339
Upstream-342
Matrix_146ORA47Not availableUpstream-340
Upstream-343
Matrix_147ERF3;AT1G80580Not availableUpstream-340
Upstream-341
Upstream-343
Upstream-344
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-341
Upstream-342
Upstream-344
Upstream-345
Matrix_190ATERF1Not availableUpstream-337
Upstream-338
Upstream-339
Upstream-340
Upstream-341
Upstream-342
Upstream-344
Upstream-345
Upstream-347
Upstream-348
Upstream-353
Upstream-354
Upstream-368
Upstream-369
Matrix_224ERF1Not availableUpstream-339
Upstream-340
Upstream-342
Upstream-343
Upstream-345
Upstream-346
Upstream-348
Upstream-349
Upstream-354
Upstream-355
Upstream-369
Upstream-370
Matrix_234RAP2.3Not availableUpstream-337
Upstream-340
Upstream-343
Matrix_243RAP2.12;RAP2.2Not availableUpstream-341
Upstream-342
Upstream-344
Upstream-345
Matrix_244DREB2CNot availableUpstream-351
Upstream-357
Matrix_252RAP2.6Not availableUpstream-337
Upstream-338
Upstream-340
Upstream-341
Upstream-342
Upstream-343
Upstream-344
Upstream-346
Upstream-347
Matrix_261ATERF-1Not availableUpstream-337
Upstream-338
Upstream-340
Upstream-341
Upstream-343
Upstream-344
Matrix_269FHY3/FAR1Not availableUpstream-283
Upstream-284
Upstream-444
Upstream-445
Upstream-448
Matrix_272DEAR4Not availableUpstream-340
Upstream-343
Matrix_287ERF2Not availableUpstream-337
Upstream-340
Upstream-343
Matrix_288RAP2.3Not availableUpstream-339
Upstream-342
Matrix_295ERF1Not availableUpstream-340
Upstream-343
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-603
Upstream-604
Matrix_315MYB111Not availableUpstream-736
Matrix_321HRDNot availableUpstream-337
Upstream-340
Upstream-343
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-336
Upstream-339
Upstream-342
Matrix_334AT3G23230Not availableUpstream-341
Upstream-344
Matrix_343AT2G33710Not availableUpstream-337
Upstream-338
Upstream-340
Upstream-341
Upstream-343
Upstream-344
Upstream-346
Upstream-347
Upstream-352
Upstream-353
Matrix_344ATERF15;AT4G18450Not availableUpstream-340
Upstream-341
Upstream-343
Upstream-344
Matrix_355ERF10;ERF11Not availableUpstream-339
Upstream-342
Matrix_360ORA59Not availableUpstream-340
Upstream-341
Upstream-343
Upstream-344
Matrix_363RAP2.3Not availableUpstream-339
Upstream-342
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-254
Matrix_374AT5G07580;AT5G61590Not availableUpstream-340
Upstream-341
Upstream-343
Upstream-344
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-337
Upstream-340
Upstream-343
Upstream-346
Upstream-352
Upstream-358
Matrix_378ATERF1Not availableUpstream-337
Upstream-338
Upstream-340
Upstream-341
Upstream-343
Upstream-344
Upstream-346
Upstream-347
Upstream-352
Upstream-353
Matrix_385DEAR4Not availableUpstream-351
Upstream-357
Matrix_394DREB_UNot availableUpstream-336
Upstream-351
Upstream-357
Matrix_405DREB2CNot availableUpstream-341
Matrix_406ATERF-7Not availableUpstream-338
Upstream-339
Upstream-341
Upstream-342
Matrix_409DEAR3Not availableUpstream-336
Upstream-339
Upstream-342
Upstream-345
Matrix_426CRF1;CRF2Not availableUpstream-341
Upstream-344
Matrix_448ATERF6Not availableUpstream-342
Upstream-343
Matrix_45DRNNot availableUpstream-340
Upstream-341
Upstream-343
Upstream-344
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-336
Upstream-339
Upstream-342
Upstream-345
Upstream-351
Upstream-357
Matrix_462ATERF-8Not availableUpstream-338
Upstream-339
Upstream-341
Upstream-342
Matrix_47AtMYB77Not availableUpstream-343
Matrix_473RRTF1Not availableUpstream-337
Upstream-338
Upstream-340
Upstream-341
Upstream-343
Upstream-344
Upstream-352
Upstream-353
Matrix_484ATERF13Not availableUpstream-340
Upstream-343
Matrix_493AT1G22985;AT1G71130Not availableUpstream-337
Upstream-340
Upstream-343
Matrix_50ATERF14;AT5G43410Not availableUpstream-339
Upstream-342
Matrix_506DRNL;ATERF-4Not availableUpstream-338
Upstream-341
Upstream-344
Matrix_515ddf2;ATCBF3;CBF1;CBF4Not availableUpstream-335
Matrix_517ERF12Not availableUpstream-340
Upstream-341
Upstream-343
Upstream-344
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-336
Upstream-337
Upstream-339
Upstream-340
Upstream-342
Upstream-343
Upstream-345
Upstream-346
Upstream-348
Upstream-349
Upstream-351
Upstream-352
Upstream-354
Upstream-355
Upstream-357
Upstream-358
Upstream-369
Upstream-370
Matrix_61ATCBF3Not availableUpstream-336
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-341
Upstream-342
Upstream-344
Upstream-345
Matrix_91CRF3Not availableUpstream-337
Upstream-338
Upstream-340
Upstream-341
Upstream-343
Upstream-344
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-252
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFUpstream-582
Motif_202OPAQUE2ZM22ZOpaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02Upstream-605
Motif_210REBETALGLHCB21REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulationUpstream-1730
Motif_216PYRIMIDINEBOXHVEPB1Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA inductionUpstream-455
Upstream-1918
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-569
Upstream-575
Upstream-686
Motif_244ABRE-like binding site motifNot availableUpstream-607
Motif_262WRKY70Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thalianaUpstream-331
Upstream-1790
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-341
Upstream-344
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-607
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-623
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-432
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-337
Upstream-396
Motif_43CCA1 binding site motifCCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb geneUpstream-253
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-338
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-260
Upstream-716
Upstream-736
Upstream-1894
Motif_543TATCCACHVAL21TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA responseUpstream-1697
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-285
Upstream-446
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-585
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-338
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-73
Upstream-74
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-564
Upstream-583
Upstream-681
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-716
Upstream-736
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-583