Matrix_109 | GBF3 | Not available | Upstream | -189 |
Matrix_166 | TGA4 | Not available | Upstream | -187 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -189 |
| | | Upstream | -417 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -189 |
| | | Upstream | -417 |
Matrix_278 | AtbZIP44 | Not available | Upstream | -187 |
Matrix_296 | GBF2 | Not available | Upstream | -189 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -189 |
| | | Upstream | -420 |
Matrix_306 | TGA1 | TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -185 |
Matrix_331 | GBF1 | Not available | Upstream | -189 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -186 |
Matrix_456 | bZIP60 | Not available | Upstream | -188 |
| | | Upstream | -439 |
Matrix_488 | ABF1 | Not available | Upstream | -187 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -187 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -189 |
| | | Upstream | -419 |
| | | Upstream | -503 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -1887 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -189 |
| | | Upstream | -421 |
| | | Upstream | -505 |
| | | Upstream | -1386 |
| | | Upstream | -1483 |
Motif_347 | OPAQUE2ZMB32 | opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC) | Upstream | -186 |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | Upstream | -188 |
Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -188 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -188 |
| | | Upstream | -1011 |
| | | Upstream | -1042 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -190 |
| | | Upstream | -419 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -188 |
| | | Upstream | -1011 |
| | | Upstream | -1042 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -682 |
| | | Upstream | -683 |
| | | Upstream | -684 |
| | | Upstream | -685 |
| | | Upstream | -686 |
| | | Upstream | -687 |
| | | Upstream | -688 |
| | | Upstream | -689 |
| | | Upstream | -690 |
| | | Upstream | -691 |
| | | Upstream | -692 |
| | | Upstream | -693 |
| | | Upstream | -754 |
| | | Upstream | -755 |
| | | Upstream | -868 |
| | | Upstream | -869 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -190 |
| | | Upstream | -419 |
| | | Upstream | -1908 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -190 |
Motif_652 | AUXRETGA2GMGH3 | TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224 | Upstream | -188 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Intron | 111 |
| | | Intron | 109 |
| | | Intron | 107 |
| | | Intron | 105 |
Motif_95 | UPRE2AT | XBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR | Upstream | -186 |