Matrix_104 | PI | Not available | Upstream | -381 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -774 |
Matrix_109 | GBF3 | Not available | Upstream | -381 |
| | | Upstream | -379 |
Matrix_111 | ABF3 | Not available | Upstream | -464 |
Matrix_113 | ABI5 | Not available | Upstream | -381 |
| | | Upstream | -379 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -353 |
Matrix_120 | BEE2 | Not available | Upstream | -380 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -381 |
| | | Upstream | -380 |
Matrix_129 | ABF1 | Not available | Upstream | -380 |
Matrix_134 | ABF1 | Not available | Upstream | -380 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -379 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -353 |
Matrix_150 | UNE10;PIF7 | Not available | Upstream | -772 |
Matrix_156 | POC1 | Not available | Upstream | -381 |
Matrix_184 | AGL15 | Not available | Upstream | -726 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -776 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -379 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -380 |
Matrix_214 | AP1 | Not available | Upstream | -382 |
Matrix_215 | ARF1 | ARF1, a transcription factor that binds to auxin response elements | Upstream | -470 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -379 |
Matrix_224 | ERF1 | Not available | Upstream | -355 |
Matrix_24 | POC1 | Not available | Upstream | -353 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -353 |
Matrix_247 | PIF3 | Not available | Upstream | -380 |
Matrix_25 | AP3 | Not available | Upstream | -545 |
Matrix_264 | ATAREB1 | Not available | Upstream | -380 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -301 |
Matrix_287 | ERF2 | Not available | Upstream | -354 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -380 |
| | | Upstream | -379 |
Matrix_301 | PIL5 | Not available | Upstream | -379 |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -389 |
Matrix_331 | GBF1 | Not available | Upstream | -381 |
| | | Upstream | -379 |
Matrix_332 | SPT;ALC | Not available | Upstream | -380 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -354 |
Matrix_345 | POC1 | Not available | Upstream | -353 |
Matrix_359 | FLC | Not available | Upstream | -382 |
Matrix_360 | ORA59 | Not available | Upstream | -354 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Upstream | -317 |
| | | Upstream | -315 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -354 |
Matrix_389 | ILR3 | Not available | Upstream | -380 |
Matrix_403 | BZR1 | Not available | Upstream | -382 |
Matrix_405 | DREB2C | Not available | Upstream | -353 |
Matrix_406 | ATERF-7 | Not available | Upstream | -356 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -773 |
Matrix_440 | LFY | Not available | Upstream | -350 |
Matrix_443 | AGL15 | Not available | Upstream | -382 |
Matrix_45 | DRN | Not available | Upstream | -354 |
Matrix_48 | PI | Not available | Upstream | -500 |
Matrix_480 | BES1 | Not available | Upstream | -381 |
Matrix_484 | ATERF13 | Not available | Upstream | -354 |
Matrix_488 | ABF1 | Not available | Upstream | -381 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -354 |
Matrix_511 | AT1G05805;AT1G35460;AT1G51140;AT2G42280;AT2G43140;AT4G09180 | Not available | Upstream | -349 |
Matrix_53 | MYC3 | Not available | Upstream | -382 |
Matrix_55 | PIF3 | Not available | Upstream | -381 |
Matrix_64 | PIF5 | Not available | Upstream | -772 |
Matrix_7 | PIF4 | Not available | Upstream | -380 |
Matrix_77 | PRR5 | Not available | Upstream | -382 |
| | | Upstream | -381 |
Matrix_80 | BIM1 | Not available | Upstream | -379 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -463 |
| | | Upstream | -378 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -463 |
| | | Upstream | -378 |
| | | Upstream | -347 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -380 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -464 |
| | | Upstream | -463 |
| | | Upstream | -379 |
| | | Upstream | -378 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -465 |
| | | Upstream | -380 |
| | | Upstream | -378 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -464 |
| | | Upstream | -463 |
| | | Upstream | -378 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -380 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -1543 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -353 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -463 |
| | | Upstream | -378 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -322 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -379 |
Motif_542 | ABI5;AtMYC2;HY5 | A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | Upstream | -380 |
Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Upstream | -301 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -380 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -381 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -465 |
| | | Upstream | -380 |
| | | Upstream | -377 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -380 |
Motif_645 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -347 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -1529 |
| | | Upstream | -294 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -465 |
| | | Upstream | -377 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -775 |