View conserved binding sites


Gene
AT1G13740
Description
ABI five binding protein 2
Alias
ABI five binding protein 2;Q9LMX5
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-381
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-774
Matrix_109GBF3Not availableUpstream-381
Upstream-379
Matrix_111ABF3Not availableUpstream-464
Matrix_113ABI5Not availableUpstream-381
Upstream-379
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-353
Matrix_120BEE2Not availableUpstream-380
Matrix_122ABF1;AREB2Not availableUpstream-381
Upstream-380
Matrix_129ABF1Not availableUpstream-380
Matrix_134ABF1Not availableUpstream-380
Matrix_145GBF4;AT5G44080Not availableUpstream-379
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-353
Matrix_150UNE10;PIF7Not availableUpstream-772
Matrix_156POC1Not availableUpstream-381
Matrix_184AGL15Not availableUpstream-726
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-776
Matrix_192FHY3/FAR1Not availableUpstream-379
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-380
Matrix_214AP1Not availableUpstream-382
Matrix_215ARF1ARF1, a transcription factor that binds to auxin response elementsUpstream-470
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-379
Matrix_224ERF1Not availableUpstream-355
Matrix_24POC1Not availableUpstream-353
Matrix_243RAP2.12;RAP2.2Not availableUpstream-353
Matrix_247PIF3Not availableUpstream-380
Matrix_25AP3Not availableUpstream-545
Matrix_264ATAREB1Not availableUpstream-380
Matrix_269FHY3/FAR1Not availableUpstream-301
Matrix_287ERF2Not availableUpstream-354
Matrix_300bZIP68;bZIP16Not availableUpstream-380
Upstream-379
Matrix_301PIL5Not availableUpstream-379
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-389
Matrix_331GBF1Not availableUpstream-381
Upstream-379
Matrix_332SPT;ALCNot availableUpstream-380
Matrix_344ATERF15;AT4G18450Not availableUpstream-354
Matrix_345POC1Not availableUpstream-353
Matrix_359FLCNot availableUpstream-382
Matrix_360ORA59Not availableUpstream-354
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-317
Upstream-315
Matrix_374AT5G07580;AT5G61590Not availableUpstream-354
Matrix_389ILR3Not availableUpstream-380
Matrix_403BZR1Not availableUpstream-382
Matrix_405DREB2CNot availableUpstream-353
Matrix_406ATERF-7Not availableUpstream-356
Matrix_438AtbZIP63Not availableUpstream-773
Matrix_440LFYNot availableUpstream-350
Matrix_443AGL15Not availableUpstream-382
Matrix_45DRNNot availableUpstream-354
Matrix_48PINot availableUpstream-500
Matrix_480BES1Not availableUpstream-381
Matrix_484ATERF13Not availableUpstream-354
Matrix_488ABF1Not availableUpstream-381
Matrix_5AT5G51190;ERF104Not availableUpstream-354
Matrix_511AT1G05805;AT1G35460;AT1G51140;AT2G42280;AT2G43140;AT4G09180Not availableUpstream-349
Matrix_53MYC3Not availableUpstream-382
Matrix_55PIF3Not availableUpstream-381
Matrix_64PIF5Not availableUpstream-772
Matrix_7PIF4Not availableUpstream-380
Matrix_77PRR5Not availableUpstream-382
Upstream-381
Matrix_80BIM1Not availableUpstream-379
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-463
Upstream-378
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-463
Upstream-378
Upstream-347
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-380
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-464
Upstream-463
Upstream-379
Upstream-378
Motif_244ABRE-like binding site motifNot availableUpstream-465
Upstream-380
Upstream-378
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-464
Upstream-463
Upstream-378
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-380
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-1543
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-353
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-463
Upstream-378
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-322
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-379
Motif_542ABI5;AtMYC2;HY5A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesisUpstream-380
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-301
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-380
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-381
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-465
Upstream-380
Upstream-377
Motif_638ABRE binding site motifNot availableUpstream-380
Motif_645BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-347
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-1529
Upstream-294
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-465
Upstream-377
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-775