Matrix_104 | PI | Not available | Upstream | -202 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -202 |
Matrix_109 | GBF3 | Not available | Upstream | -202 |
| | | Upstream | -200 |
Matrix_113 | ABI5 | Not available | Upstream | -202 |
| | | Upstream | -200 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -205 |
| | | Upstream | -204 |
Matrix_120 | BEE2 | Not available | Upstream | -201 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -202 |
| | | Upstream | -201 |
Matrix_129 | ABF1 | Not available | Upstream | -201 |
Matrix_134 | ABF1 | Not available | Upstream | -201 |
| | | Upstream | -200 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -201 |
| | | Upstream | -200 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -200 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -205 |
Matrix_156 | POC1 | Not available | Upstream | -202 |
| | | Upstream | -200 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -201 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -204 |
| | | Upstream | -200 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -204 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -201 |
Matrix_214 | AP1 | Not available | Upstream | -203 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -204 |
| | | Upstream | -200 |
Matrix_233 | MYC3 | Not available | Upstream | -200 |
Matrix_24 | POC1 | Not available | Upstream | -205 |
Matrix_247 | PIF3 | Not available | Upstream | -201 |
Matrix_259 | AT1G50680;AT1G51120 | Not available | Upstream | -201 |
Matrix_264 | ATAREB1 | Not available | Upstream | -204 |
| | | Upstream | -201 |
Matrix_296 | GBF2 | Not available | Upstream | -201 |
| | | Upstream | -200 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -201 |
| | | Upstream | -200 |
Matrix_301 | PIL5 | Not available | Upstream | -200 |
Matrix_323 | BIM3 | Not available | Upstream | -201 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -201 |
Matrix_331 | GBF1 | Not available | Upstream | -202 |
| | | Upstream | -200 |
Matrix_332 | SPT;ALC | Not available | Upstream | -201 |
| | | Upstream | -200 |
Matrix_338 | AP2 | Not available | Upstream | -204 |
Matrix_339 | bHLH104 | Not available | Upstream | -201 |
Matrix_345 | POC1 | Not available | Upstream | -205 |
| | | Upstream | -204 |
Matrix_356 | PRR5 | Not available | Upstream | -208 |
| | | Upstream | -204 |
Matrix_389 | ILR3 | Not available | Upstream | -201 |
Matrix_403 | BZR1 | Not available | Upstream | -203 |
Matrix_414 | AGL15 | Not available | Upstream | -40 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -232 |
Matrix_443 | AGL15 | Not available | Upstream | -203 |
Matrix_455 | MYB111 | Not available | Upstream | -587 |
Matrix_456 | bZIP60 | Not available | Upstream | -230 |
Matrix_488 | ABF1 | Not available | Upstream | -209 |
| | | Upstream | -202 |
Matrix_520 | ARR14 | Not available | Upstream | -210 |
Matrix_53 | MYC3 | Not available | Upstream | -203 |
| | | Upstream | -199 |
Matrix_55 | PIF3 | Not available | Upstream | -202 |
Matrix_64 | PIF5 | Not available | Upstream | -200 |
Matrix_7 | PIF4 | Not available | Upstream | -201 |
| | | Upstream | -199 |
Matrix_77 | PRR5 | Not available | Upstream | -203 |
| | | Upstream | -202 |
Matrix_80 | BIM1 | Not available | Upstream | -202 |
| | | Upstream | -200 |
Matrix_9 | AT5G04760 | Not available | Upstream | -172 |
Motif_134 | ANAC092 | NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis | Upstream | -198 |
Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | Upstream | -170 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -199 |
Motif_181 | IBOXCORENT | I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions | Upstream | -171 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Upstream | -130 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Upstream | -125 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -199 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -201 |
| | | Upstream | -200 |
Motif_210 | REBETALGLHCB21 | REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulation | Upstream | -138 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -200 |
| | | Upstream | -199 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -177 |
Motif_223 | LTRE1HVBLT49 | LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGAC | Upstream | -135 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -201 |
| | | Upstream | -199 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -44 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -130 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -201 |
| | | Upstream | -199 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -129 |
Motif_300 | ACGTROOT1;HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA | Upstream | -201 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -199 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -131 |
| | | Upstream | -127 |
Motif_419 | MYB4 binding site motif | Not available | Upstream | -130 |
Motif_426 | MYB58;MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Upstream | -130 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -200 |
| | | Upstream | -199 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -200 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -201 |
| | | Upstream | -198 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -132 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -201 |
| | | Upstream | -198 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -201 |
| | | Upstream | -199 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -202 |
| | | Upstream | -198 |
Motif_649 | 2SSEEDPROTBANAPA | Conserved in many storage-protein gene promoters; May be important for high activity of the napA promoter | Upstream | -510 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -131 |
Motif_689 | ANAC092 | NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis | Upstream | -209 |
| | | Upstream | -208 |