View conserved binding sites


Gene
AT1G06680
Description
photosystem II subunit P-1
Alias
Q42029;OE23
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-202
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-202
Matrix_109GBF3Not availableUpstream-202
Upstream-200
Matrix_113ABI5Not availableUpstream-202
Upstream-200
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-205
Upstream-204
Matrix_120BEE2Not availableUpstream-201
Matrix_122ABF1;AREB2Not availableUpstream-202
Upstream-201
Matrix_129ABF1Not availableUpstream-201
Matrix_134ABF1Not availableUpstream-201
Upstream-200
Matrix_14ZCW32;AT5G62610Not availableUpstream-201
Upstream-200
Matrix_145GBF4;AT5G44080Not availableUpstream-200
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-205
Matrix_156POC1Not availableUpstream-202
Upstream-200
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-201
Matrix_192FHY3/FAR1Not availableUpstream-204
Upstream-200
Matrix_194HYH;HY5Not availableUpstream-204
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-201
Matrix_214AP1Not availableUpstream-203
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-204
Upstream-200
Matrix_233MYC3Not availableUpstream-200
Matrix_24POC1Not availableUpstream-205
Matrix_247PIF3Not availableUpstream-201
Matrix_259AT1G50680;AT1G51120Not availableUpstream-201
Matrix_264ATAREB1Not availableUpstream-204
Upstream-201
Matrix_296GBF2Not availableUpstream-201
Upstream-200
Matrix_300bZIP68;bZIP16Not availableUpstream-201
Upstream-200
Matrix_301PIL5Not availableUpstream-200
Matrix_323BIM3Not availableUpstream-201
Matrix_330MYC2;TT8Not availableUpstream-201
Matrix_331GBF1Not availableUpstream-202
Upstream-200
Matrix_332SPT;ALCNot availableUpstream-201
Upstream-200
Matrix_338AP2Not availableUpstream-204
Matrix_339bHLH104Not availableUpstream-201
Matrix_345POC1Not availableUpstream-205
Upstream-204
Matrix_356PRR5Not availableUpstream-208
Upstream-204
Matrix_389ILR3Not availableUpstream-201
Matrix_403BZR1Not availableUpstream-203
Matrix_414AGL15Not availableUpstream-40
Matrix_438AtbZIP63Not availableUpstream-232
Matrix_443AGL15Not availableUpstream-203
Matrix_455MYB111Not availableUpstream-587
Matrix_456bZIP60Not availableUpstream-230
Matrix_488ABF1Not availableUpstream-209
Upstream-202
Matrix_520ARR14Not availableUpstream-210
Matrix_53MYC3Not availableUpstream-203
Upstream-199
Matrix_55PIF3Not availableUpstream-202
Matrix_64PIF5Not availableUpstream-200
Matrix_7PIF4Not availableUpstream-201
Upstream-199
Matrix_77PRR5Not availableUpstream-203
Upstream-202
Matrix_80BIM1Not availableUpstream-202
Upstream-200
Matrix_9AT5G04760Not availableUpstream-172
Motif_134ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisUpstream-198
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-170
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-199
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsUpstream-171
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-130
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-125
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-199
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-201
Upstream-200
Motif_210REBETALGLHCB21REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulationUpstream-138
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-200
Upstream-199
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-177
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACUpstream-135
Motif_244ABRE-like binding site motifNot availableUpstream-201
Upstream-199
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-44
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-130
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-201
Upstream-199
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-129
Motif_300ACGTROOT1;HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABAUpstream-201
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-199
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-131
Upstream-127
Motif_419MYB4 binding site motifNot availableUpstream-130
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisUpstream-130
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-200
Upstream-199
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-200
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-201
Upstream-198
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-132
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-201
Upstream-198
Motif_638ABRE binding site motifNot availableUpstream-201
Upstream-199
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-202
Upstream-198
Motif_6492SSEEDPROTBANAPAConserved in many storage-protein gene promoters; May be important for high activity of the napA promoterUpstream-510
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-131
Motif_689ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisUpstream-209
Upstream-208