View conserved binding sites


Gene
AT1G04820
Description
tubulin alpha-4 chain
Alias
B9DGT7;tubulin alpha-4 chain
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-170
Matrix_143GATA14;GATA6;GATA5Not availableIntron151
Intron149
Intron108
Matrix_195GATA2;GATA4Not availableIntron491
Matrix_203GATA9;GATA12Not availableIntron365
Intron109
Upstream-86
Upstream-87
Matrix_356PRR5Not availableUpstream-168
Matrix_39AP1Not availableUpstream-34
Upstream-35
Matrix_443AGL15Not availableUpstream-169
Motif_1GT1CORECritical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complexUpstream-312
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-100
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Upstream-27
Motif_375ERELEE4ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter regionUpstream-238
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-97
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-97
Motif_76SURE1STPAT21Sucrose Responsive Element (SURE); A motif conserved among genes regulated by sucrose; See also SURE2STPAT21; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potatoUpstream-98