View conserved binding sites


Gene
AT1G01720
Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Alias
Q39013;ATAF1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableDownstream1058
Matrix_104PINot availableUpstream-236
Upstream-195
Matrix_109GBF3Not availableUpstream-290
Matrix_111ABF3Not availableUpstream-193
Matrix_113ABI5Not availableUpstream-195
Upstream-193
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-239
Matrix_120BEE2Not availableUpstream-235
Matrix_122ABF1;AREB2Not availableUpstream-235
Upstream-195
Upstream-194
Matrix_129ABF1Not availableUpstream-235
Upstream-194
Matrix_134ABF1Not availableUpstream-194
Upstream-193
Matrix_145GBF4;AT5G44080Not availableUpstream-234
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-198
Matrix_156POC1Not availableUpstream-236
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-235
Matrix_166TGA4Not availableUpstream-288
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-238
Upstream-235
Matrix_192FHY3/FAR1Not availableUpstream-197
Upstream-193
Matrix_194HYH;HY5Not availableUpstream-197
Matrix_196TCP20;AT5G41030Not availableUpstream-447
Matrix_214AP1Not availableUpstream-196
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-197
Matrix_224ERF1Not availableDownstream1059
Matrix_24POC1Not availableUpstream-198
Matrix_247PIF3Not availableUpstream-235
Matrix_264ATAREB1Not availableUpstream-235
Upstream-197
Upstream-194
Matrix_278AtbZIP44Not availableUpstream-249
Matrix_287ERF2Not availableDownstream1058
Matrix_296GBF2Not availableUpstream-289
Matrix_297TCP15Not availableUpstream-340
Matrix_300bZIP68;bZIP16Not availableUpstream-289
Matrix_301PIL5Not availableUpstream-193
Matrix_306TGA1TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-288
Matrix_311TGA1Not availableUpstream-288
Matrix_330MYC2;TT8Not availableUpstream-235
Matrix_331GBF1Not availableUpstream-290
Matrix_332SPT;ALCNot availableUpstream-235
Matrix_335HSFB2ANot availableUpstream-226
Matrix_338AP2Not availableUpstream-197
Matrix_340HSFC1Not availableUpstream-226
Matrix_343AT2G33710Not availableDownstream1058
Matrix_345POC1Not availableUpstream-239
Matrix_356PRR5Not availableUpstream-201
Upstream-197
Matrix_360ORA59Not availableDownstream1060
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-431
Matrix_399TGA1Not availableUpstream-288
Matrix_403BZR1Not availableUpstream-237
Upstream-196
Matrix_438AtbZIP63Not availableUpstream-289
Matrix_443AGL15Not availableUpstream-196
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-431
Matrix_456bZIP60Not availableUpstream-289
Matrix_457TGA2Not availableUpstream-287
Matrix_465MYC4Not availableUpstream-235
Matrix_478AT1G01250Not availableUpstream-430
Matrix_480BES1Not availableUpstream-236
Upstream-195
Upstream-194
Matrix_488ABF1Not availableUpstream-269
Upstream-262
Upstream-202
Matrix_499ARR18Not availableUpstream-204
Matrix_507TCP3Not availableUpstream-340
Matrix_53MYC3Not availableUpstream-237
Matrix_55PIF3Not availableUpstream-236
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-288
Matrix_7PIF4Not availableUpstream-235
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-430
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-153
Motif_134ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisUpstream-203
Upstream-202
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-233
Upstream-192
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-279
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-233
Upstream-192
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-172
Upstream-171
Motif_213ZML2The CRYPTOCHROME1-Dependent Response to Excess Light Is Mediated through the Transcriptional Activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in ArabidopsisUpstream-226
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-259
Upstream-234
Upstream-233
Upstream-193
Upstream-192
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-279
Motif_244ABRE-like binding site motifNot availableUpstream-289
Upstream-194
Upstream-192
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-233
Upstream-231
Upstream-193
Upstream-192
Downstream1109
Motif_262WRKY70Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thalianaUpstream-163
Motif_270ELRECOREPCRP1ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in ArabidopsisDownstream1128
Motif_275AtbZIP1The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA bindingUpstream-289
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-279
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-287
Upstream-233
Upstream-192
Motif_349QARBNEXTAQAR (quantitative activator region) in promoter region of Brassica napus extA extensin geneUpstream-259
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-288
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-288
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-234
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-286
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-231
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-289
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-259
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-286
Motif_585ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDHPRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in ArabidopsisDownstream1133
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-289
Upstream-258
Upstream-194
Upstream-191
Motif_634ANAERO4CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Upstream-265
Motif_652AUXRETGA2GMGH3TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224Upstream-289
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-258
Upstream-194
Upstream-191