Matrix_101 | ERF5 | Not available | Downstream | 1058 |
Matrix_104 | PI | Not available | Upstream | -236 |
| | | Upstream | -195 |
Matrix_109 | GBF3 | Not available | Upstream | -290 |
Matrix_111 | ABF3 | Not available | Upstream | -193 |
Matrix_113 | ABI5 | Not available | Upstream | -195 |
| | | Upstream | -193 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -239 |
Matrix_120 | BEE2 | Not available | Upstream | -235 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -235 |
| | | Upstream | -195 |
| | | Upstream | -194 |
Matrix_129 | ABF1 | Not available | Upstream | -235 |
| | | Upstream | -194 |
Matrix_134 | ABF1 | Not available | Upstream | -194 |
| | | Upstream | -193 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -234 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -198 |
Matrix_156 | POC1 | Not available | Upstream | -236 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -235 |
Matrix_166 | TGA4 | Not available | Upstream | -288 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -238 |
| | | Upstream | -235 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -197 |
| | | Upstream | -193 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -197 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -447 |
Matrix_214 | AP1 | Not available | Upstream | -196 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -197 |
Matrix_224 | ERF1 | Not available | Downstream | 1059 |
Matrix_24 | POC1 | Not available | Upstream | -198 |
Matrix_247 | PIF3 | Not available | Upstream | -235 |
Matrix_264 | ATAREB1 | Not available | Upstream | -235 |
| | | Upstream | -197 |
| | | Upstream | -194 |
Matrix_278 | AtbZIP44 | Not available | Upstream | -249 |
Matrix_287 | ERF2 | Not available | Downstream | 1058 |
Matrix_296 | GBF2 | Not available | Upstream | -289 |
Matrix_297 | TCP15 | Not available | Upstream | -340 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -289 |
Matrix_301 | PIL5 | Not available | Upstream | -193 |
Matrix_306 | TGA1 | TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -288 |
Matrix_311 | TGA1 | Not available | Upstream | -288 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -235 |
Matrix_331 | GBF1 | Not available | Upstream | -290 |
Matrix_332 | SPT;ALC | Not available | Upstream | -235 |
Matrix_335 | HSFB2A | Not available | Upstream | -226 |
Matrix_338 | AP2 | Not available | Upstream | -197 |
Matrix_340 | HSFC1 | Not available | Upstream | -226 |
Matrix_343 | AT2G33710 | Not available | Downstream | 1058 |
Matrix_345 | POC1 | Not available | Upstream | -239 |
Matrix_356 | PRR5 | Not available | Upstream | -201 |
| | | Upstream | -197 |
Matrix_360 | ORA59 | Not available | Downstream | 1060 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -431 |
Matrix_399 | TGA1 | Not available | Upstream | -288 |
Matrix_403 | BZR1 | Not available | Upstream | -237 |
| | | Upstream | -196 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -289 |
Matrix_443 | AGL15 | Not available | Upstream | -196 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -431 |
Matrix_456 | bZIP60 | Not available | Upstream | -289 |
Matrix_457 | TGA2 | Not available | Upstream | -287 |
Matrix_465 | MYC4 | Not available | Upstream | -235 |
Matrix_478 | AT1G01250 | Not available | Upstream | -430 |
Matrix_480 | BES1 | Not available | Upstream | -236 |
| | | Upstream | -195 |
| | | Upstream | -194 |
Matrix_488 | ABF1 | Not available | Upstream | -269 |
| | | Upstream | -262 |
| | | Upstream | -202 |
Matrix_499 | ARR18 | Not available | Upstream | -204 |
Matrix_507 | TCP3 | Not available | Upstream | -340 |
Matrix_53 | MYC3 | Not available | Upstream | -237 |
Matrix_55 | PIF3 | Not available | Upstream | -236 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -288 |
Matrix_7 | PIF4 | Not available | Upstream | -235 |
Matrix_73 | DEAR3;RAP2.9;RAP2.10 | Not available | Upstream | -430 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -153 |
Motif_134 | ANAC092 | NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis | Upstream | -203 |
| | | Upstream | -202 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -233 |
| | | Upstream | -192 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -279 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -233 |
| | | Upstream | -192 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -172 |
| | | Upstream | -171 |
Motif_213 | ZML2 | The CRYPTOCHROME1-Dependent Response to Excess Light Is Mediated through the Transcriptional Activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in Arabidopsis | Upstream | -226 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -259 |
| | | Upstream | -234 |
| | | Upstream | -233 |
| | | Upstream | -193 |
| | | Upstream | -192 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -279 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -289 |
| | | Upstream | -194 |
| | | Upstream | -192 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -233 |
| | | Upstream | -231 |
| | | Upstream | -193 |
| | | Upstream | -192 |
| | | Downstream | 1109 |
Motif_262 | WRKY70 | Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thaliana | Upstream | -163 |
Motif_270 | ELRECOREPCRP1 | ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis | Downstream | 1128 |
Motif_275 | AtbZIP1 | The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding | Upstream | -289 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -279 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -287 |
| | | Upstream | -233 |
| | | Upstream | -192 |
Motif_349 | QARBNEXTA | QAR (quantitative activator region) in promoter region of Brassica napus extA extensin gene | Upstream | -259 |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | Upstream | -288 |
Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -288 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -234 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -286 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -231 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -289 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -259 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -286 |
Motif_585 | ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH | PRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in Arabidopsis | Downstream | 1133 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -289 |
| | | Upstream | -258 |
| | | Upstream | -194 |
| | | Upstream | -191 |
Motif_634 | ANAERO4CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Upstream | -265 |
Motif_652 | AUXRETGA2GMGH3 | TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224 | Upstream | -289 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -258 |
| | | Upstream | -194 |
| | | Upstream | -191 |