PLAZA 3.0 Dicots : Binding Sites

Gene families associated with a binding site

All is shown and individual cells refer to the target genes (per species).

Binding site: Motif_187
Name: AT1BOX
Description: AT-1 box (AT-rich element) found in the promoter region of the genes for tobacco chlorophyll a/b binding protein (cab) and small subunit of ribulose-1,5-bisphosphate carboxylase (rbcS); Deletion of a region containing the AT-1 site in the tomato RBCS3A gene strongly inhibited reporter gene expression, whereas AT-1 site in N. plumbaginifolia CAB gene (cab-E) is in a negative element

#Associated genes: 117
#Associated gene families: 90

Click table-header(s) to enable sorting

gene family	#genes (in total)	#associated genes	species	aly	ath	atr	bra	bvu	cla	cme	cpa	cre	cru	csi	egr	fve	gma	gra	lja	mdo	mes	mtr	olu	osa	ppa	ppe	ptr	rco	sly	stu	tca	tpa	vvi	zma
HOM03D000003	5194	1	29	164	155	111	274	119	132	138	132	0	149	141	208	140	378	236	93	304	303	236	0	162	95	132	257	154	183	171	134	150	135	208
HOM03D000006	4746	1	31	109	98	110	148	109	92	93	87	13	108	236	311	151	290	205	84	422	150	249	4	173	110	186	252	121	134	183	139	89	152	138
HOM03D000007	4579	2	29	124	134	36	177	83	55	74	55	0	148	181	480	134	258	137	43	457	140	281	0	161	2	188	346	97	119	166	144	79	172	108
HOM03D000016	2558	4	30	60	55	136	69	60	62	54	39	2	56	86	202	97	111	75	29	245	87	126	0	97	7	112	126	72	95	120	71	44	83	80
HOM03D000020	2209	1	29	27	25	73	42	51	6	12	10	0	24	271	244	62	68	177	11	123	98	190	0	17	3	33	235	39	44	50	146	12	112	4
HOM03D000024	2160	1	31	70	64	45	98	53	50	65	77	37	64	57	64	59	165	94	34	142	74	73	15	53	88	55	97	52	66	70	52	72	71	84
HOM03D000033	1847	1	31	60	57	47	94	54	44	47	50	42	58	59	72	63	119	85	16	16	62	86	45	53	74	55	77	60	56	64	47	51	63	71
HOM03D000034	1745	1	31	57	51	66	76	35	43	45	36	2	53	56	75	62	118	69	24	63	54	87	3	102	31	68	69	45	73	67	46	46	39	84
HOM03D000036	1694	1	31	53	51	54	93	41	37	34	38	12	55	52	85	52	110	62	32	110	63	62	5	51	13	56	64	49	72	81	55	40	68	44
HOM03D000048	1511	1	29	17	14	25	22	6	9	12	20	0	30	44	216	26	91	60	19	200	42	153	0	56	7	47	113	30	24	78	77	13	22	38
HOM03D000049	1503	1	30	41	46	54	85	21	41	46	33	0	45	52	71	41	146	76	38	17	57	93	1	53	8	50	51	41	48	54	54	47	47	46
HOM03D000055	1402	2	29	30	34	42	39	23	22	33	36	0	34	71	99	60	33	70	13	95	54	60	0	54	11	26	59	53	52	108	46	13	96	36
HOM03D000061	1331	1	31	50	45	30	66	32	33	39	31	14	47	32	44	34	103	65	24	96	49	51	3	47	27	32	56	32	40	45	35	39	33	57
HOM03D000065	1299	1	29	8	8	58	13	37	22	25	22	0	8	66	139	39	68	56	7	121	54	63	0	88	5	20	89	43	43	56	53	8	48	32
HOM03D000066	1292	2	31	43	41	24	67	31	31	30	31	18	38	35	40	31	79	63	20	78	54	43	9	49	23	37	60	34	53	61	34	38	39	58
HOM03D000074	1202	2	31	60	48	28	80	22	26	24	28	2	45	23	32	32	72	28	16	118	61	59	1	39	17	76	48	28	24	27	29	37	41	31
HOM03D000076	1177	4	31	40	39	23	64	27	28	30	59	12	39	31	27	29	72	51	17	90	45	41	10	40	30	31	47	26	36	38	31	43	29	52
HOM03D000078	1155	1	31	31	32	30	44	24	25	35	23	12	27	30	55	40	64	40	19	72	43	63	8	36	38	34	60	54	35	49	31	32	33	36
HOM03D000086	1066	1	29	30	32	29	49	25	28	30	38	0	31	27	38	26	74	53	13	93	43	43	0	29	27	27	45	26	36	42	30	32	28	42
HOM03D000098	1003	1	29	33	63	27	62	13	25	34	19	0	47	26	60	30	51	24	9	56	26	43	0	59	30	39	40	22	14	15	30	49	35	22
HOM03D000099	1002	1	29	26	25	17	36	18	15	18	20	0	25	26	92	36	59	31	13	78	32	80	0	53	4	36	70	14	24	30	35	21	27	41
HOM03D000104	938	1	29	30	32	14	61	19	31	28	24	0	31	20	25	22	78	48	21	54	45	61	0	28	13	22	39	22	34	30	21	31	16	38
HOM03D000109	885	1	29	19	24	18	28	28	24	23	17	0	13	22	43	20	43	36	14	59	40	50	0	62	24	33	36	20	30	33	32	14	28	52
HOM03D000120	808	1	30	28	20	11	34	24	21	17	17	1	22	36	32	67	43	21	13	113	29	25	0	17	11	47	27	16	22	26	15	20	15	18
HOM03D000125	772	1	31	30	25	12	39	16	25	25	20	2	24	22	29	21	54	43	10	46	30	27	1	23	16	18	43	27	28	24	21	23	22	26
HOM03D000138	734	1	29	25	20	13	34	16	35	42	28	0	19	22	27	21	53	30	16	49	33	28	0	16	7	18	24	24	21	20	22	22	30	19
HOM03D000143	727	2	31	27	21	20	32	16	17	19	23	23	25	17	21	22	43	26	9	53	25	22	19	19	34	17	34	20	17	16	19	22	17	32
HOM03D000146	710	1	30	24	23	12	39	12	20	19	15	1	21	17	21	16	58	26	10	40	25	62	0	46	15	14	30	18	22	21	15	23	14	31
HOM03D000176	581	1	31	20	19	7	32	11	10	12	11	5	19	11	18	17	35	34	13	44	21	25	4	15	41	11	21	12	20	18	16	17	10	32
HOM03D000193	538	2	29	17	19	10	33	13	21	17	15	0	19	12	19	15	38	30	10	36	21	27	0	11	2	14	21	12	21	22	14	18	15	16
HOM03D000203	506	1	31	9	9	9	11	6	7	6	15	4	8	7	52	20	18	15	5	58	20	20	3	12	3	40	26	10	17	29	15	9	35	8
HOM03D000243	443	1	29	9	8	14	19	8	8	7	11	0	11	10	40	11	39	16	9	21	15	32	0	25	3	12	25	11	8	10	8	9	20	24
HOM03D000248	436	1	31	15	14	2	9	13	7	7	5	35	12	10	8	18	25	17	9	29	11	33	4	14	16	8	20	10	17	19	9	12	11	17
HOM03D000258	425	2	31	18	11	19	26	10	11	8	10	9	11	10	9	8	31	14	7	37	13	15	10	13	17	8	19	8	11	14	11	11	12	14
HOM03D000276	412	1	29	14	14	6	28	17	13	17	13	0	14	13	13	7	24	21	7	16	17	13	0	15	7	9	15	12	14	17	13	16	9	18
HOM03D000329	357	1	29	11	9	10	17	6	12	12	14	0	8	14	25	10	16	9	9	36	12	13	0	10	2	10	14	10	13	15	10	9	15	6
HOM03D000331	354	1	29	15	15	5	24	11	12	12	7	0	15	10	14	7	29	19	5	13	10	10	0	18	2	6	12	6	15	13	8	14	8	19
HOM03D000332	354	1	28	10	12	5	18	8	12	12	8	0	12	10	10	6	25	21	4	23	19	11	0	15	0	9	19	11	11	11	9	12	10	21
HOM03D000340	350	2	30	11	7	8	24	8	13	11	10	1	8	10	12	12	21	12	4	33	8	36	0	12	5	15	11	5	9	13	5	7	4	15
HOM03D000364	336	1	31	9	10	13	14	12	7	8	9	6	7	10	19	9	18	10	6	27	12	25	2	8	13	7	16	7	6	7	8	9	10	12
HOM03D000382	324	1	27	37	27	0	33	2	2	2	9	0	16	18	40	11	5	6	1	26	6	5	0	1	0	13	16	1	3	14	7	17	4	2
HOM03D000390	320	1	31	15	7	6	13	8	7	10	8	3	9	6	16	15	23	15	7	16	10	7	4	9	14	10	12	7	9	16	7	7	9	15
HOM03D000396	314	1	31	13	16	5	23	9	7	8	8	1	14	7	5	9	24	15	5	25	9	15	2	9	4	9	15	8	7	8	9	14	1	10
HOM03D000414	302	1	31	10	10	5	13	4	8	9	6	3	10	7	7	8	22	17	4	18	12	18	1	14	8	7	11	6	10	12	8	9	9	16
HOM03D000416	302	1	29	7	9	5	14	4	9	7	5	0	9	8	30	8	15	8	6	19	12	9	0	11	5	9	16	8	9	11	9	10	17	13
HOM03D000454	279	1	29	12	13	2	16	8	6	7	4	0	13	10	13	3	22	19	4	8	9	11	0	11	3	8	21	6	7	8	9	9	5	12
HOM03D000486	264	1	30	6	8	4	18	14	6	8	5	4	8	11	25	7	8	10	3	22	9	7	0	3	6	5	12	8	4	12	9	8	7	7
HOM03D000497	259	1	31	6	6	7	12	6	8	8	7	7	6	6	9	4	18	11	4	12	12	9	2	7	9	7	16	8	11	12	7	6	7	9
HOM03D000521	250	1	31	11	11	3	19	6	4	4	8	1	8	6	8	12	15	12	5	13	9	9	1	10	4	7	10	10	7	6	7	9	7	8
HOM03D000523	249	1	30	6	6	4	14	5	8	8	6	0	6	10	9	5	23	16	4	16	12	8	1	6	3	6	12	6	11	11	7	6	6	8
HOM03D000567	234	1	31	6	6	3	9	4	6	6	6	2	6	5	11	6	21	8	2	11	9	10	1	6	6	9	10	9	9	11	6	5	15	10
HOM03D000593	228	1	31	8	7	3	16	3	5	5	6	1	8	5	6	5	21	9	3	16	11	9	1	7	2	7	11	5	8	6	6	8	7	13
HOM03D000603	225	1	28	8	8	5	12	5	8	7	6	0	8	6	8	7	18	12	2	14	10	12	0	4	0	6	11	6	8	8	7	9	5	5
HOM03D000607	224	1	31	7	8	4	8	7	5	7	5	5	8	7	8	4	11	9	4	6	7	8	4	7	7	7	13	5	10	11	7	8	6	11
HOM03D000621	219	2	31	7	6	6	11	3	6	7	5	2	6	6	4	5	15	11	3	19	8	10	2	7	5	5	10	6	8	8	4	6	6	12
HOM03D000626	218	1	29	8	7	4	10	5	7	7	5	0	7	4	10	4	21	8	6	12	10	13	0	7	1	4	9	5	5	5	5	7	5	17
HOM03D000651	210	1	31	5	7	2	10	2	4	3	5	1	7	4	24	7	14	8	3	16	9	7	2	3	3	6	10	5	6	16	6	5	7	3
HOM03D000741	188	1	31	10	12	4	15	2	4	4	4	1	7	10	5	6	10	13	3	10	6	3	1	4	2	4	7	4	7	7	6	9	3	5
HOM03D000888	164	1	30	3	3	3	5	3	3	3	4	1	5	6	11	3	10	7	2	13	8	9	0	4	3	7	8	5	7	9	5	4	5	5
HOM03D001440	110	1	30	2	3	3	3	2	3	3	3	3	2	7	8	3	8	4	2	3	5	3	0	2	4	4	7	5	3	4	4	3	3	1
HOM03D001574	103	1	28	2	3	2	7	2	2	2	2	0	3	2	7	2	8	2	3	7	4	9	0	2	0	4	6	3	2	3	3	2	6	3
HOM03D001601	102	1	31	6	2	3	8	2	2	2	3	1	3	2	3	2	4	7	3	5	5	2	1	2	4	2	4	2	2	6	2	2	3	7
HOM03D001699	97	1	28	7	4	2	6	1	1	1	2	0	5	3	1	1	4	4	2	12	4	2	0	4	0	2	3	4	3	6	4	3	2	4
HOM03D001733	95	1	28	3	3	0	6	3	3	3	2	0	3	2	3	2	9	4	2	5	4	6	0	3	1	2	4	3	4	3	2	3	4	3
HOM03D001744	95	1	31	3	3	2	4	2	2	2	4	1	3	2	1	4	7	5	4	7	3	6	1	3	2	1	3	2	3	4	2	2	5	2
HOM03D001768	94	1	30	3	3	3	5	1	2	2	3	1	2	2	1	2	7	7	0	2	4	5	1	4	3	2	3	2	2	2	10	3	2	5
HOM03D001774	94	1	31	2	2	4	2	2	2	1	3	1	1	2	2	2	9	3	1	3	4	5	1	3	5	3	4	2	4	6	4	2	5	4
HOM03D001985	86	1	22	0	0	1	0	9	2	3	1	0	0	1	15	1	3	0	1	6	6	3	0	5	0	3	3	2	5	4	1	0	1	10
HOM03D002008	85	1	29	2	2	6	3	3	3	4	3	0	2	2	2	2	4	3	1	4	4	3	0	2	2	3	5	2	2	6	2	2	2	4
HOM03D002468	73	1	30	2	2	1	3	3	2	2	2	1	3	3	3	5	4	3	1	4	2	2	0	2	3	3	1	2	2	2	3	2	3	2
HOM03D002492	72	2	31	2	2	1	2	2	2	2	2	4	2	2	2	2	4	2	2	5	4	3	1	2	2	2	4	2	2	2	2	2	2	2
HOM03D002575	70	4	30	1	1	2	3	2	2	2	0	1	1	6	1	2	3	1	1	8	2	2	1	4	2	2	2	2	2	2	2	1	1	8
HOM03D002767	66	1	31	2	2	1	3	2	2	1	1	1	2	1	1	5	3	4	1	5	1	3	2	1	3	2	3	2	1	1	3	2	4	1
HOM03D002906	62	1	28	4	2	2	1	1	1	1	0	0	2	2	2	2	6	2	2	5	3	4	0	2	1	2	2	2	1	1	2	2	2	3
HOM03D003193	57	1	29	1	1	1	3	1	2	2	1	0	1	1	1	0	4	5	2	2	3	2	1	2	4	1	2	2	2	2	3	2	2	1
HOM03D003855	49	4	26	2	2	1	6	1	2	2	1	0	2	1	1	2	2	1	2	5	2	2	0	0	0	1	2	1	2	2	1	2	1	0
HOM03D004591	43	1	30	1	1	1	1	1	1	1	1	1	1	2	1	1	4	3	1	3	2	2	0	1	1	2	1	1	1	3	1	1	1	1
HOM03D004954	41	1	31	1	1	1	1	1	1	1	1	2	1	1	1	1	4	1	1	3	1	2	1	2	2	1	1	1	1	1	1	1	1	2
HOM03D005050	41	1	30	1	2	1	1	2	1	1	1	2	1	1	1	1	2	1	0	3	1	1	4	1	1	1	2	1	1	1	1	1	1	2
HOM03D005164	40	1	28	1	1	1	1	1	1	1	1	0	1	1	2	1	2	1	0	3	1	1	0	1	1	1	2	1	5	4	1	1	1	1
HOM03D005270	40	1	29	1	1	1	1	1	0	1	1	1	1	1	4	1	4	1	1	0	1	1	1	1	2	1	2	1	3	1	1	1	2	1
HOM03D005607	38	3	27	1	1	2	1	1	1	1	2	1	1	1	1	1	3	3	0	3	1	1	0	0	0	1	2	2	1	1	1	1	1	2
HOM03D005720	37	1	29	2	2	1	3	1	1	1	1	1	1	1	1	0	2	1	0	2	1	1	1	1	2	1	2	1	1	1	1	1	1	1
HOM03D006019	36	2	24	3	2	0	1	2	0	1	1	0	1	1	1	0	2	1	0	1	0	2	1	2	2	2	2	0	1	2	1	1	1	2
HOM03D006479	34	1	29	0	1	1	1	1	1	1	1	1	2	1	1	0	1	1	1	2	1	2	1	1	1	1	1	1	2	2	1	1	1	1
HOM03D006863	32	1	26	1	1	1	1	1	1	2	1	0	2	1	1	1	1	1	1	1	0	1	0	1	0	5	1	0	1	1	1	1	1	1
HOM03D007348	28	2	21	1	1	0	3	0	1	0	1	0	1	1	1	1	2	1	0	1	2	2	0	0	0	1	2	1	2	1	1	1	0	0
HOM03D007447	27	2	22	1	1	0	0	1	1	1	1	0	1	1	1	1	1	1	0	1	1	1	0	0	0	0	3	1	1	4	1	1	0	1
HOM03D007470	27	1	22	0	0	1	0	1	1	1	1	0	0	1	1	1	3	1	0	1	1	3	0	1	0	1	2	1	1	1	1	0	1	1
HOM03D008025	18	1	12	0	0	0	0	1	2	0	1	0	0	0	0	1	0	2	0	2	3	0	0	0	0	1	2	1	1	0	1	0	0	0